Kwoniella botswanensis: 90012344
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Entry
90012344 CDS
T11304
Symbol
L199_001357
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
kbo Kwoniella botswanensis
Pathway
kbo03013
Nucleocytoplasmic transport
kbo03015
mRNA surveillance pathway
kbo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kbo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
90012344 (L199_001357)
09122 Translation
03013 Nucleocytoplasmic transport
90012344 (L199_001357)
03015 mRNA surveillance pathway
90012344 (L199_001357)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kbo03019
]
90012344 (L199_001357)
03041 Spliceosome [BR:
kbo03041
]
90012344 (L199_001357)
Enzymes [BR:
kbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
90012344 (L199_001357)
Messenger RNA biogenesis [BR:
kbo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
90012344 (L199_001357)
Spliceosome [BR:
kbo03041
]
Complex C
Other components
EJC/TREX
90012344 (L199_001357)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
90012344 (L199_001357)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
DNA_ligase_A_N
Ned1_M
Motif
Other DBs
NCBI-GeneID:
90012344
NCBI-ProteinID:
XP_064743184
LinkDB
All DBs
Position
1:complement(join(3553845..3553966,3554038..3554219,3554296..3554405,3554478..3554609,3554684..3554802,3555363..3555664,3555727..3555835,3555902..3555969,3556031..3556179))
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AA seq
430 aa
AA seq
DB search
MSRPDEEELVDYDEAAEETFAPAATTATNGDKADGDKKGSYVGIHSTGFRDFLLKPELLR
AISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLACLQQIEPVDGEVSIVI
LCHTRELAYQIRNEFARFSKFMTNVRTGVFYGGTPISADQEILASKEKCPHIVVGTPGRT
MALVRDKKLNATKVKHFVLDECDKMLETLDMRRDVQEIFRATPHHKQVMMFSATLSKDIR
TTCKKFMQSPLEIYVDDETKLTLHGLQQYFLKLEEKEKNRKLNDLLDNLEFNQVCIFVKS
VARATQLDALLQECNFPSICIHSALPQQERISRFQQFKAFEKRILVATDIFGRGIDVERV
NVVINYDAPADADSYLHRVGRAGRFGTKGLAITFVSSDGDSEVLQKIQERFTVAIPTLPE
TIDPATYMTS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacctgatgaagaagagctcgttgattacgatgaggccgccgaggagaccttc
gccccagctgctacaaccgctaccaatggtgataaagcagatggtgataagaaaggttct
tatgtcggtatccactcgacaggtttcagagatttccttctaaaacctgaattacttcga
gccatctcagatctcggttttgaacatccttccgaagttcaacaagaatgtatcccccaa
gctatcttaggtactgatgtattatgtcaagctaaatccggtatgggtaagaccgccgta
ttcgtactcgcttgtttacaacagatcgaacctgtcgatggagaggtatcaatcgtgatc
ttatgtcacactcgagaattggcctatcaaattcgaaatgaatttgcgagattctccaag
ttcatgaccaacgtccgaaccggtgtgttttacggtggtacccccatttctgccgatcaa
gagatcttagcctcaaaggagaaatgtccacacatcgtcgtaggaactccaggtagaacg
atggctttggtcagggataagaaactcaacgcgacaaaggtcaaacacttcgtattggac
gaatgtgataagatgctagaaacacttgatatgcgaagagatgttcaagagatcttccga
gctactccccaccacaaacaagttatgatgttctccgccaccctgtctaaagacatccga
accacttgtaagaagtttatgcaaagtcctctggaaatctatgtcgatgacgagaccaaa
ttgacccttcacggtcttcagcaatacttcctcaagctcgaggagaaggagaagaacagg
aaactcaacgacttgctcgataacctcgagtttaaccaggtctgtatctttgtcaaatct
gtcgcccgagccactcaactcgacgcgttattgcaagaatgtaatttcccttctatctgt
atccactctgctcttcctcaacaagaacgtatctcacgattccagcaattcaaagctttc
gagaaacgtatcctggtagctacggatatcttcggtcgaggtatcgatgttgaacgagtc
aacgttgtcatcaactatgatgctcctgctgatgctgactcgtacctccatcgagtcggt
agagcaggtcgattcggtaccaagggtttagccatcacattcgtatcttccgatggtgat
tccgaagtacttcaaaagattcaagagagattcaccgttgccattcctactttacctgag
actattgatcctgccacttatatgacttcttaa
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