KEGG   Kwoniella botswanensis: 90016360
Entry
90016360          CDS       T11304                                 
Symbol
L199_005376
Name
(RefSeq) uncharacterized protein
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
kbo  Kwoniella botswanensis
Pathway
kbo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:kbo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    90016360 (L199_005376)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kbo03019]
    90016360 (L199_005376)
Enzymes [BR:kbo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     90016360 (L199_005376)
Messenger RNA biogenesis [BR:kbo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     90016360 (L199_005376)
  mRNA degradation factors
   3'-5' decay
    Ski complex
     90016360 (L199_005376)
SSDB
Motif
Pfam: DSHCT DEAD Ski2_N MTR4_beta-barrel MTR4-like_stalk ResIII Helicase_C DEXQc_Suv3 HTH_Tnp_ISL3 Eapp_C TerB_C
Other DBs
NCBI-GeneID: 90016360
NCBI-ProteinID: XP_064747159
LinkDB
Position
1:complement(join(14234831..14234871,14234953..14235121,14235255..14235722,14235784..14236011,14236090..14236220,14236294..14236423,14236476..14236661,14236735..14237097,14237168..14237235,14237289..14237384,14237444..14238039,14238099..14238205,14238257..14238361,14238435..14238567,14238621..14238766,14238830..14238862,14238928..14239023,14239081..14239283,14239358..14239707,14239774..14239997))
AA seq 1290 aa
MPVEEDESLADATFLELLHTAGHPSSSDALSSEELASALGIDGPLSKERALELLEKEVLA
SVESLQGDELWRWQVQPPVDLPIPPLTLRPLYQTHTVTPSYKGIDGTFTHWREGLAPKPP
AHPTLSSSTTRAPGSLQNFVRGKGSYAPFLPGGLEAAAKPEEEENEQEEEEEDEGWKTRA
PGMRRGIKLEGADEFLAEMLGQQSIAPKAKRRRKEGEFEPQLTISRLGDEDAEEEVEQIS
TNGHAGPSSKNVDDLLPIGRLPAPPPPRRQFKAAVHKEWAHVVDVNQRLVNFNELVPEMA
RDYPFELDNFQKEAVYRLEMGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIKA
LSNQKFRDFKTTFDPSTVGILTGDVQINAEGSCLIMTTEILRSMLYKGADLIRDVEFVIF
DEVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKKKDIYVISTPM
RPVPLEHFLWAGKDIHKIVDSKSHFLGDGYKSAQEASRRKQDKEREANGLPPVQRTGGRG
GAPTRAKDLPTGKNAPFTKIGAGRTHTNRAGGNGAPAPAVASRGGRGGGRGGFGGRASHQ
LDQNVWTHLINYLKKNSLLPVVNFVFSKKRCEEYAQTLGAMDLNSAKERSEVHLTWERAL
TRLKGSDKTLPQILRMRDLLSRGIGVHHGGLLPLVKEVVELLFSRGLVKVLFATETFAMG
VNMPAKCVVFSGIRKHDGTSFRNLLPGEYTQMAGRAGRRGLDTTGTVILLSGEELPSVTE
LNEMMLGTPNRLSSQFRLTYNMILNLLRVEALKVEEMIKRSFSENATQKMAPEQQRQIAH
AEKQLSRLPNVECDVCKTDIDAFYELSSEVVRLNQSIFKQASYAQNATKIFVPGRVVILR
NGHLPGNLAILLRSATSLTTDGVKSDAKAWRMLVLVTPGQRSRKEDVKESEVPPRWPPVL
PKGSFPNPQWEIGVYDTTSLSFVVNRILKVDHSGIVDKSSKDSRDKALHDLTILHEELSS
VPELPEVDWSRIRAVEFVDAIRQRAILHDRLNKLGCQLCSDFQEHYSILHERKVVESGLV
ALKLSLSDQNLELLPDYNSRVEVLKKLQFIDENSTVLLKGRVACEINSAPELILTELILE
NILSEYEPEEVVALLSIFVFVEKSDSQPVIPPKIQQGLEVIYKIADQVEREQDKCSVQYD
QFDEKYKVGLVEVVYEWAKGMPFNQITELTDIPEGTIVRVITRLDETCREVRDAARVIGD
AELFQKMEAAQALIKRDIVFAASLVSFPFH
NT seq 3873 nt   +upstreamnt  +downstreamnt
atgcctgtagaagaagacgagtcactcgccgacgctacgttcctcgagctgttgcacaca
gctggacacccttcatcgagcgatgcactctcaagtgaagagctcgcgtcagctctaggg
atcgatggaccactgagcaaggaaagagcattggaactgctggagaaggaggtgctagct
tctgtggagagtttacaaggtgatgagctttggagatggcaggttcaacctccagtagac
ctgccgatcccacctctgacgctgagaccactttaccaaacacatactgtcacaccttcg
tacaagggtatagacggtactttcacccattggcgagaaggtctagcacccaaaccacct
gctcatcccacattatcctcttcgacaacccgagcaccaggatctctacagaatttcgtt
agaggaaagggaagctatgcaccctttttacctggtggattagaggccgctgccaagcct
gaagaagaggagaatgaacaggaggaagaggaagaagacgaagggtggaagactagagct
ccggggatgagaaggggaatcaagcttgagggggccgacgaattcctggcggaaatgcta
ggccaacagtctatagcgcctaaagctaagcgaaggaggaaagagggggagtttgaacct
cagttaacaatctctagattaggagatgaagatgcagaggaagaagtggagcaaatcagt
acaaacggtcacgcaggaccaagtagtaagaatgtggatgatctattgcccataggccga
cttcccgctcctccaccaccgagaagacaattcaaggctgctgtacataaggaatgggcg
catgtagtagatgtcaatcagcggcttgtcaatttcaacgagctcgtcccagaaatggca
agagactaccccttcgaacttgataacttccagaaagaagctgtatacagattggaaatg
ggagatagtgtcttcgttgccgcacatacctcagctggtaagactgttgtagcggagtat
gctatcgccttggcagcgaagcacatgacgaaagctatctatacatcccctatcaaagct
ttatcgaatcagaaattccgagatttcaagaccaccttcgacccttcgactgtcggtatt
ttgactggagatgtgcagatcaacgcggagggtagttgcttgattatgaccaccgaaatt
ctacgaagtatgctttacaaaggggcggatctgatcagagatgtggagtttgtcattttt
gatgaagtgcattacgtgaacgatgctgagcgaggagttgtatgggaggaagtgatcatc
atgttaccagaacatgtcaatataatattgctttctgctacggttccgaataccaaagag
ttcgcggattgggtaggccgaaccaagaagaaagatatctatgtcatctcgacacctatg
cgacctgttccattggaacatttcctctgggccggtaaagacatacataagatcgtagat
tctaaatcgcatttcctcggtgatggatacaagagtgctcaggaagcttcaaggaggaaa
caagataaggaacgagaagccaacggattaccacctgtacaacgaacgggtggtagagga
ggagcaccgaccagagccaaagatctacctacgggcaagaatgcgcctttcacgaagatc
ggggcgggacgtacgcatactaatcgagcgggtgggaatggtgcgcctgcacctgctgtt
gcctctcgaggaggaagaggaggtgggagaggtggctttggtggaagagcaagtcaccaa
ttggaccaaaatgtctggacacaccttatcaattacctcaagaagaactcattattgcct
gtcgtcaatttcgtgtttagtaagaagcgatgtgaagagtatgctcaaacgcttggggcg
atggatctcaacagcgcaaaagagaggagtgaagtccatttgacgtgggaaagggctttg
actaggttgaaggggtccgataagactttacctcaaatcttgaggatgagggatttgctt
agtagaggtataggtgtacatcatggtggattgttacctctggtgaaagaggtggttgag
ttactgttttcacgagggctcgtcaaagtattattcgcaaccgaaacattcgctatggga
gtcaacatgccagctaaatgtgtagtcttctctggtatccgaaaacatgacggaacatct
ttccgaaacctcttaccaggtgaatatactcaaatggctggaagagccggacgaagagga
ctggacacaaccggaactgtcatcttattaagtggagaagaattaccctcagtcacagaa
ttgaacgagatgatgttgggtactccgaatagattatcatcacaattcagattaacatat
aatatgatattgaacttattgagagtggaagcgcttaaggtggaggagatgatcaaaagg
agtttctcggagaatgccacgcaaaaaatggctccagaacaacaaagacagattgctcat
gcggaaaagcaattatccagattacctaatgtcgagtgcgatgtctgtaaaacggatatt
gatgcgttctacgagctctcttcagaagtggtcagactcaatcaatcaatctttaagcag
gcttcgtacgctcagaatgcaactaagatattcgtccctggaagagtcgtgatcttgcgt
aatggtcatctgcctgggaatctcgcgatcttacttcgaagtgcgactagcctcacaact
gatggagttaaatccgatgcgaaagcttggaggatgttggtccttgttactccaggccag
agatcaaggaaggaagatgtcaaggaatccgaagtgcctcctcgttggccgcctgtctta
cctaaaggttctttccctaatcctcaatgggagatcggtgtctacgatactaccagtttg
tcctttgttgtgaaccgtatactcaaagtcgaccattccggtatcgtcgataagagcagt
aaagattcacgagacaaagcgttacacgacttgacgattttacatgaagaactatcgtct
gttcctgaattaccagaagtcgattggtcaagaatcagagctgtcgaatttgtcgacgcg
atcagacaaagggcaattctacatgataggttgaacaagctgggctgtcaattatgtagt
gatttccaagaacactactcgatcctacatgagcgcaaagtagtcgagtctggactagtc
gcccttaagttatctctgtccgatcagaacctagaactattaccagactataattcccga
gtggaagttctcaagaaattgcaattcatcgatgagaactctacggtactcctgaaaggt
agagtagcatgtgagatcaattctgcaccagaattgattctgacggaattgatattggag
aacatcctgagcgaatatgaacctgaggaagtcgttgcgttactctctatctttgttttc
gttgagaaatcagactctcaacctgttattccaccgaagatccaacaggggttagaagtg
atttacaagattgcggatcaagttgagagagaacaggataaatgtagtgtgcagtatgat
cagtttgatgagaagtataaggtagggttggttgaggttgtttatgagtgggcgaaagga
atgccattcaaccaaattaccgaactcaccgatatacccgaaggaaccattgtgcgagtc
atcacgcgtctagacgagacgtgtagagaggtcagagacgcagcgagagtgatcggtgat
gcggaactgttccagaagatggaagctgctcaggcgttgatcaagagggatatcgtcttc
gctgctagtttggtaagttttccgtttcactga

DBGET integrated database retrieval system