Ktedonosporobacter rubrisoli: EPA93_02860
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Entry
EPA93_02860 CDS
T05969
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kbs
Ktedonosporobacter rubrisoli
Pathway
kbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EPA93_02860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kbs03019
]
EPA93_02860
03400 DNA repair and recombination proteins [BR:
kbs03400
]
EPA93_02860
Enzymes [BR:
kbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EPA93_02860
Messenger RNA biogenesis [BR:
kbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EPA93_02860
DNA repair and recombination proteins [BR:
kbs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EPA93_02860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
P-loop_SecA
DUF3553
Cas3-like_C_2
AAA_30
SWI2_SNF2
HEM4
Glyco_tran_WecG
AAA_22
Ferritin_2
FakA-like_M
Motif
Other DBs
NCBI-ProteinID:
QBD83355
UniProt:
A0A4P6K5I3
LinkDB
All DBs
Position
640397..641992
Genome browser
AA seq
531 aa
AA seq
DB search
MFGYEQLRPGQEAAIQALLEGHDTLAIMPTGSGKSLIYQAASQMIEGPTIVVSPLIALQR
DQVEAIEARDLGRAAWLNSTLGEAARQAVFELLARHELEFLFLAPEQFDNEETLQQLQKA
RPALFVVDEAHCISEWGHDFRPDYLRLGAVNDALGHPRILALTATAALPVREEIMQRLNM
HEPRTIVQGLDRPNIWLGVETFQDEAEKQRALVEHVLKAEKPGIIYTATHKHAEELAKAL
NKEYIKIKAYHAGLKDKEREQIQQAFMQNELEVIVATIAFGMGVDKADVRFVYHYDISDS
VDAYYQEIGRAGRDGKPARAILFYYPRDLDLQRFLASSAHLHSNEVQRIVSAVQAYGRPV
APKVLQKELKLAESRIAQIITRLAAEQVIELLPSGEVAPGQQRQPLRDVARDVVETQENH
RQLEHSRVAMIQGYAETLDCRRGYLLNYFGQPFEGRCGNCDNCQDGNARDEQNEYQPFPL
NSRVAHPEWGEGQIMRYENDKITVLFDKVGYKMLSRNIVAEKDLLRPVQDT
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgtttggctacgagcagcttcgccctggccaggaagctgccatccaagccttgcttgag
ggacacgataccctggcgatcatgccaactggttcgggcaaatcgctgatttatcaggcg
gcctctcagatgatagagggcccaaccatcgttgtctctccgcttattgccttgcagcgc
gatcaggtcgaggctattgaggctcgcgatctaggtcgggcggcctggctcaattcaact
ctgggagaggctgctcgacaggctgtatttgagctgcttgccaggcatgagctagaattc
ctctttctggctcccgaacagttcgacaatgaggagacgcttcagcagttacaaaaggcc
aggccagctttgtttgtcgtcgacgaggcccactgcatcagcgagtgggggcatgacttc
cggcctgattatctgcgcctgggtgccgttaacgacgctctgggccatcctcgcattctc
gccttgaccgcgaccgctgcactaccggtgcgcgaagagattatgcaacgactcaatatg
catgagccacgtacgattgtacaagggctcgatcgtcccaacatttggctgggagtggaa
acgttccaggatgaggcagagaagcaacgcgccctcgtcgagcacgttctcaaggcggag
aaacccggcatcatctatacagccacccataagcacgccgaggagctggccaaagccctg
aacaaggaatacatcaagattaaggcctatcatgctggcctgaaggataaagaacgagag
cagatccagcaggctttcatgcaaaatgagttagaggttattgtagctacgatagccttt
ggcatgggcgtggataaagccgatgtgcgtttcgtctaccactacgatatcagcgattct
gtggatgcctactatcaggagattgggcgcgccggacgcgatggcaaaccggcccgcgct
attctcttttactatccgcgcgatctggatctacaacgcttcttagccagtagcgcgcat
cttcactcaaacgaggtgcaaaggatcgtgagcgctgtccaggcctacggcagacccgta
gccccgaaagtgctgcaaaaggagttgaagcttgcagaaagcaggatagcccagattatc
accaggctggccgcagaacaggttatagagctgctaccctccggcgaagtagcgccaggg
cagcagaggcaaccccttagagatgttgccagggacgtggtagagacgcaggaaaaccat
cgacaacttgagcattcacgagttgcgatgatccagggctatgccgagacgcttgattgc
cgcagaggctacctgctcaactattttggccagccatttgaaggacgctgcggcaactgc
gacaattgccaggacggcaacgcacgggacgagcaaaacgagtaccagccattcccgctc
aatagccgagttgctcatcccgaatggggcgaggggcagatcatgcgttatgaaaacgat
aagatcacggttctcttcgataaggtgggctataaaatgctctcgcgcaatattgttgct
gaaaaagacctgctcaggccggttcaagacacttag
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