Ktedonosporobacter rubrisoli: EPA93_14605
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Entry
EPA93_14605 CDS
T05969
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kbs
Ktedonosporobacter rubrisoli
Pathway
kbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EPA93_14605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kbs03019
]
EPA93_14605
03016 Transfer RNA biogenesis [BR:
kbs03016
]
EPA93_14605
Enzymes [BR:
kbs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EPA93_14605
Messenger RNA biogenesis [BR:
kbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EPA93_14605
Transfer RNA biogenesis [BR:
kbs03016
]
Prokaryotic type
tRNA degradation factors
EPA93_14605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
dsrm
DSRM_CARF
RdfA
Motif
Other DBs
NCBI-ProteinID:
QBD77161
UniProt:
A0A4V0YYR7
LinkDB
All DBs
Position
complement(3248737..3250965)
Genome browser
AA seq
742 aa
AA seq
DB search
MIKNYDRRNQSFSALALAEISDVEHRAKTILADRPIVKGITIDGPTSRDLDDAFWLESRL
QGGYTLFITIADVGSLITRHLAPELDKSAFTRAFTRYNADYNRPMLPTAISEECLSLHEG
QMRPTLTLALPFDAQLHPGEPHIYRTSLTSLKRFCFQEVDDEIEHPRSKFAPLLQTAYQL
ANSLFHRRRARGALALYDLHSGWVTTEEGQLLKLTEKECHKAHIIIQEFMILTNQTLAFF
LASRDIPALYRNHTAKAIAPQRSTLLEMLDNVILHPEIAQPERISTTVNIALERARYAPS
IIGHFGLNVPAYLHLTSPLRRYPDLVNQRILHAFLEGVPCPYTKIELETIAAHINAEEDN
EKERQRSHHLEKHDKILRNMVHQAIQNHSQSPRPLSTLDAKQFHSVLRMAAQEQTPQPAV
EQEILARLKDQALSAHDLFTLLFRFPNQGENWRTVKQTALQWLQNHTYHAGSILLMGKQS
LGWAEPECEITPRGPDDQRTFLAKASIEIGERCYISSTHISAQKSRAKQKAFAELLALIA
GFEKQLPAELSSLDVASHEISPPNPASSAAEDSQANSSLKNYKGKLLERAQAEKWNPPLY
KEIERVGPPHAPTFLVEGTISIENRVYQAQGRGKTRVQAEQLAAQQLLQLLHQQPVSTEN
SITLSRKPAVSILNEMKQRAAVQSITYAYEPSGPPRSRIFECICLVSITNRHSVETRGKG
KTKKEAAQSAASQAIAFLSLSP
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaaactatgatagacgcaaccagagcttctctgcgctagcattggcagagatc
agtgacgtagagcatagagcaaagaccattctcgcggatagaccaatcgtcaaaggtata
acgattgatggcccaacttcgcgtgatttagacgatgcgttctggctcgaaagcaggctc
cagggaggatatacgcttttcattactattgcagatgtgggttcgcttatcacgaggcac
ttggctccagaattggacaaatcagcctttacccgcgcctttacgcgctacaacgctgat
tataatcgtcctatgcttcctactgcaatctcagaagagtgtctaagcttacacgaagga
caaatgcgcccaactcttacgcttgctcttcccttcgatgcacaacttcatcccggagaa
ccacatatctatcggacttctctcaccagcctcaagcgcttctgctttcaggaagtagat
gacgagatagaacatcctcgaagtaaatttgcacctctgttacaaacagcataccagcta
gctaatagccttttccaccgtcgaagagcacgaggagcccttgcgctctatgatctccat
tccggctgggtcacaacggaagaggggcaactactgaaattaacagagaaagaatgtcat
aaggcacatatcattatccaggaattcatgattcttaccaaccagactctagcgtttttt
ttagccagccgggacatcccagctctttatcgcaatcatacggcaaaagctattgctccc
caacgttccacattacttgagatgcttgataatgtaattttgcatccagagatagcacag
cctgaacgtataagtacaactgtcaacattgctctggaacgcgctcgctatgctccaagc
atcatagggcattttggcttgaatgtgccagcttatcttcatctgacttcaccattgcgc
cgctatcctgatctagtcaaccagaggatacttcatgcgtttctagaaggtgtgccatgc
ccttatacaaaaatagagctcgaaaccattgccgctcatattaatgctgaagaggataac
gagaaagagcgacaacgatctcaccacctggaaaaacacgataaaattctacgtaatatg
gttcatcaagccattcagaatcatagccaatctcccaggccattaagcacacttgatgca
aaacaatttcacagtgttctcaggatggcagctcaagaacaaacaccacagccggccgtt
gagcaagaaatacttgctcgtttaaaagatcaagctctctctgctcatgatctctttacc
ttgttatttcgcttccccaatcagggagaaaattggcgcactgtgaaacaaactgccctc
caatggctgcagaaccatacttatcatgcaggcagtattttgctaatgggcaagcaatcg
ctcggttgggccgagcctgaatgcgaaatcacacctcgggggccagacgatcagagaaca
tttctggcaaaagcctctatagagattggagaacgctgttatatttcttctacccatatt
tcagcacaaaagagtcgcgccaaacaaaaagctttcgcggaactattagcgcttattgca
ggcttcgagaagcagctccctgctgaactttcatctctcgacgtcgcttcgcatgagatt
tctcctcccaatcctgcatcctccgctgcagaggatagccaggccaacagctccctcaaa
aactataaaggcaagctcctagaaagagctcaggctgagaagtggaatcccccactctac
aaagaaatcgagagagtaggacctcctcatgctcctacctttcttgttgaggggacaatc
tctattgagaatagggtttatcaggctcagggacgcggcaaaacaagagttcaggctgaa
cagttagcagctcaacaattactccaacttctccatcagcaacctgtctccacggaaaac
agtataacattatcgcggaagcctgcagtaagcatcttgaatgaaatgaagcagcgggca
gcagtacaaagcattacttatgcctatgaaccttccggccctccacgctcaaggatattt
gaatgtatttgcctggtctctatcactaatcggcacagtgtagaaacaaggggcaaaggg
aaaactaaaaaggaagcggcgcaatctgccgcttcgcaagctattgcttttctttccctc
agtccctag
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