Ktedonosporobacter rubrisoli: EPA93_30520
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Entry
EPA93_30520 CDS
T05969
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kbs
Ktedonosporobacter rubrisoli
Pathway
kbs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kbs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EPA93_30520 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kbs03021
]
EPA93_30520 (rpoC)
03400 DNA repair and recombination proteins [BR:
kbs03400
]
EPA93_30520 (rpoC)
Enzymes [BR:
kbs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EPA93_30520 (rpoC)
Transcription machinery [BR:
kbs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EPA93_30520 (rpoC)
DNA repair and recombination proteins [BR:
kbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EPA93_30520 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QBD80082
UniProt:
A0A4P6JXD1
LinkDB
All DBs
Position
7037193..7041536
Genome browser
AA seq
1447 aa
AA seq
DB search
MLEVNDFNAIRISLASPEQIRSWSYGEVTKPETINYRTLKPEKDGLFCERIFGPTKDWEC
YCGKYKRVRFKGIVCDKCGVEVARSKVRRERMGHIELASPVSHIWYFKGTPSRIGLLLDL
SPRNLERILYFALYVVTNIDEEARQRELMRLDEETAGLQQDIDGKVVERVNNLRSQRDSA
IKETELRFSTTDRQEIEERRERNLEAARQAESDTLAELREYMGDAVDEDITFAPTDQIIV
KQGDVVSPKHIETLERVAETTRNAIAEQARRDIDEAQSESKREADRLGLEFQGRIDTAQT
QLEKERNDARQRLEQLRRDLEGLKKMDLLQENRYRELKDNFPDVFRAGMGAEAVRELIAS
IDLNKLSGDLRTEIGTTVGQRRKKATKRLKVVEAFRKSNTSPEWMILTVLPVLPPDLRPM
VQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIIRNEKRMLQEACDALIDNGRR
GRAVAGSGNHKLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKRM
ALELFKPFVMRKLVEQNFAHNIKSAKRFVERVKPEVWDVLEEVIKDHPVLLNRAPTLHRL
GIQAFEAVLVEGSAIQLHPLVCSAFNADFDGDQMAVHVPLSDKAQDEARQFMMSTRNLLS
PAHGEPSIGASQDMVLGCFYLTQDRPNKKGEGRVFTDATEALLAYQHGVIDLQALIKVRL
PGDTDVYNSPPPDKPTLRTNGKPVQTTVGRIIFNEALPERLRFKNYSMKKENLKQIIADC
SREYGRVKTTELADEIKRLGFYYATKAGTTIAISDVKVPIGKAEELAKADEKITELEEQY
RDGLITENEKYQQTVDAWNEATDNVTKMVEATLDPFGSIYTIAKSGATKAKFQQIRQLSG
MRGLMASPSGKIIAIPIRGNFREGLSVLEYFISSHGARKGLADTALRTAESGYLTRRLID
VAQDIIVTEEDCGTTEGILITDEDSRDMGLDGIRTRIIGRVLAEPIPGLDHIEVGEELTE
ELVDEIVEQGVKAVRVRSVFSCLARRGICRKCYGRDLAANALVRIGAAAGIIAAQSIGEP
GTQLTMRTFHTGGIAGAQGDITQGLPRVEELFEARVPKDKAEISEIDGVVEIAKDESTGV
RTVRVVSTNVFFDEYPLPEGSQILVNDQDRVQKDQVIAYMPAENGTEPVPVQARTEGDVV
INAEAPLSLRFEEREERSYPIGAARNIVVTDGQKIQAGTPLTNGQRDPQDVLRIQGRDAV
QVYLVKEVQRVYRNTGVYINDKHIEVIIRQMLRRVKVDDPGDTEMLPNDLVDRFAYADTN
ARVLAEGGEPATAQTVLLGVTKASLNTDSWLAAASFQETTRVLTEAAIEAQTDHLVGLKE
NVIIGKLIPAGSGIAQRRREELARRQANANRIAATAPVPAGIGAGTSDGLAALSSTLGLT
LDSSEEA
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaagtcaatgattttaatgccatccgtattagccttgccagccccgagcagata
cgcagctggagctatggtgaggttacgaaaccggagacaattaactatcgtacactcaag
ccagaaaaagatggtctgttctgcgaacgcatcttcggaccaaccaaagactgggagtgt
tactgcggtaaatataaaagagttcgttttaagggtatcgtctgcgataagtgtggcgtt
gaagtggcgcgctcaaaagtgcgccgcgagcgcatgggccatatcgaacttgcctctccc
gtaagccatatctggtactttaagggaacgccaagccgcattggtctcttgcttgacctc
tcgccccgtaacctggagcgcatcctctactttgcgctctacgtggttaccaatatcgac
gaagaggcccgtcagcgcgagcttatgcgtcttgacgaggagaccgctggcctgcagcaa
gatatcgacggcaaggttgtagagcgggtcaacaatctgcgctcccagcgcgatagcgcc
atcaaagagactgagctgcgcttctccacaactgaccgccaggaaattgaggagcggcgc
gagcgcaatcttgaggcggcacgccaggctgagagcgatacgctggccgagctgcgcgaa
tatatgggcgatgctgtagacgaagatataaccttcgcgccaaccgaccagattatcgtt
aaacagggcgacgtggtttcgcccaagcatatcgaaactctggagcgggtagccgagaca
acgcgtaacgctattgccgagcaggccagacgcgacatcgatgaggcgcagtccgagagc
aagcgcgaagccgatcgcctgggcctggaattccagggccgcatcgatacggcgcagacc
cagctggaaaaagagcgtaacgacgctcgccagcgtcttgagcagctgcgccgcgacctg
gaaggtctaaagaagatggacctgctccaggagaatcgctaccgcgaattaaaggacaac
ttccccgacgtcttccgcgccgggatgggagccgaggctgttcgcgagctgattgccagc
atcgatctcaacaagctgtcgggagacttgcgtaccgagattggcacaactgtcggccag
cgccgcaagaaggccaccaagcgcttgaaggtggttgaggctttccgtaagtcaaacact
tctcctgagtggatgatcctcacggtcttgccagttctaccgcccgatctgcgcccgatg
gtccagcttgatggcggtcgcttcgcaacctccgatctcaacgacctctatcgccgcgtt
atcaatcgtaataaccggctcaagaggctgctagagctcggcgcacccgaaatcatcatc
cgcaacgaaaagcgtatgttgcaggaagcttgcgatgcccttatcgataacggccgtcgc
ggtcgcgccgtcgccggttccggcaaccacaagctcaagagcctttccgacatgctcaag
ggtaagtcaggccgcttccgccagaacctgctcggtaagcgcgtcgactactctggccgt
tccgtgatcgtggtaggtccagagctcaagctgcatcagtgcggcctgcccaagcgcatg
gccctggaactgttcaagccattcgtcatgcgtaagctagtcgagcagaactttgcgcac
aacatcaagagcgccaagcgcttcgttgagcgtgtcaagccagaggtctgggacgtcctc
gaagaggtcatcaaggatcatccggtcctgctcaaccgtgcgccaacgctgcaccgcctt
ggtattcaggccttcgaagctgtgctggtcgagggtagcgctatccagctacacccgctc
gtctgttcagcctttaacgccgacttcgacggtgaccagatggcagttcacgtaccgctc
tctgacaaagcacaggatgaggcacgccagttcatgatgtctacgcgcaacctgctctcg
ccggcgcatggtgagccatcgatcggcgctagccaggatatggtgcttggctgcttctac
ctgacccaggatcgccccaacaagaagggcgagggccgtgtctttaccgatgcgaccgaa
gcattgctggcctatcagcacggcgtcatcgacctgcaggccctgatcaaagtgcgcctg
ccaggcgatacagacgtctataattcgccgccgcccgataaaccaacgctgcgcacaaac
ggcaagccagttcagactaccgttggacgcatcatctttaacgaggctttgcctgagcgc
ttgcgcttcaagaactactccatgaaaaaggagaacttgaagcagatcatcgccgactgc
tcaagagagtacggacgcgtcaaaacgaccgagctagccgacgagatcaagcgccttggc
ttctactacgccaccaaggccggtacaaccatcgccatcagcgacgtcaaagtgccgatt
ggtaaggccgaggagctcgccaaagccgatgaaaagatcaccgagctggaagagcagtat
cgtgacggtctgatcaccgagaacgagaaataccagcaaaccgttgatgcctggaacgag
gcgaccgataacgtcaccaagatggtcgaggcaaccctcgatccctttggctcgatctac
accatcgccaagtctggagcaactaaagcgaagttccagcagatccgccagctgtcgggt
atgcgtggactgatggcgagcccatcaggtaagattatcgccattcctattcgtggaaac
ttccgcgaaggtcttagcgtgctggagtactttatcagtagccacggcgcgcgtaagggt
ctggccgacaccgccctgcgaacagcagagtccggttacctgacccgccgtctgattgac
gtagcacaggatatcatcgtcaccgaagaggattgtggcaccaccgaaggcatcctgatt
accgatgaggattcccgcgatatgggccttgatggtattcgtacccgcatcatcggtcgt
gtcctcgctgagcctattccaggccttgatcacatcgaggtaggcgaagagctcaccgaa
gaacttgtagacgagatcgtcgagcaaggcgtcaaagcagtgcgcgtacgctcagtcttc
tcctgccttgcacgccgtggcatctgccgcaagtgctatggccgggacctggccgccaac
gccctggtacggatcggtgccgccgctggtattatcgccgctcagtcgatcggtgagcct
ggcacacagctgaccatgcgtaccttccacactggtggtattgcaggagcgcagggagac
atcacgcaaggcttgccgcgcgttgaagagctcttcgaagcgcgtgtgccaaaggataag
gcagagatttccgagatcgatggcgtcgtcgagatcgccaaagacgagtcaaccggcgta
cgtacggttcgcgttgtctcaaccaacgtcttcttcgacgagtatccgctgcccgagggt
agccagatacttgtcaatgaccaggatcgcgtccagaaagatcaggtcattgcctacatg
ccagccgagaacggcactgagccggtaccggtccaggcacgtacagaaggtgatgtggtc
atcaacgccgaggcgccactctccctccgctttgaggagcgagaggagcgttcatatcct
atcggagcggcgcgcaacatcgtcgtcaccgatgggcagaagatccaggctggtacaccg
ctcaccaacggtcagcgtgatccgcaggatgtcttgcgcatccagggtcgcgacgccgta
caggtgtacctggtcaaagaagtgcagcgtgtctatcgtaacacaggtgtgtacatcaac
gataagcacatcgaagtcatcattcgccagatgcttcgccgcgtcaaagtggatgatccc
ggcgatacagagatgctgcctaacgacctggttgatcgctttgcctacgccgacaccaac
gctcgcgtgctggcagaaggtggcgagccagcgaccgcgcagacagtactgctcggcgta
accaaggcttcgctcaacactgacagctggctggccgcggcctccttccaggagacaacc
cgcgtcctgaccgaagccgccattgaagcgcagacagatcacctcgtcgggttgaaagag
aatgttatcatcggtaagctgatcccggcaggttccggtatcgcccagcgccgccgcgaa
gagctggctcgtcgtcaggcaaatgccaaccgcattgccgccacggctccagtcccggcc
ggcataggcgcaggaaccagcgatggcctggccgccttgagcagtacccttggtctgact
cttgacagctccgaggaagcatga
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integrated database retrieval system
