Streptomyces sp. NL15-2K: Q4V64_02800
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Entry
Q4V64_02800 CDS
T09250
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
kbu
Streptomyces sp. NL15-2K
Brite
KEGG Orthology (KO) [BR:
kbu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kbu03016
]
Q4V64_02800
Enzymes [BR:
kbu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Q4V64_02800
Transfer RNA biogenesis [BR:
kbu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Q4V64_02800
Prokaryotic type
tRNA splicing ligases
Q4V64_02800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ScfRs
Motif
Other DBs
NCBI-ProteinID:
WKX06474
LinkDB
All DBs
Position
complement(652112..653524)
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AA seq
470 aa
AA seq
DB search
MELVQEADHRFRIEPRGAMRVPGVVFASRALLRDAEKSLEQVANVATLPGIVGASYAMPD
IHWGYGFPIGGVAATDVDQGGVVSPGGVGFDISCGVRLLAADTDRQALEAELPAVMDGLD
RSIPRGAGPGGVWKPSGTGQLERILRGGSRYAVEEGYGEERDLIRCEDGGAVADADVSEV
SRRARERGLGQVGSLGSANHFLEVQCVDEVYDETAAAAFGLAVGQVCVMIHCGSRGLGHQ
ICTDHVRAMDRAMARYGITVPDRQLACTPVDSPEGQAYLGAMAAAANYGRANRQLLSDAA
RRTFRRSAGARLSLVYDVSHNLAKIETHTVAGARRRLCVHRKGATRAFPPGHRDLPEDLR
EVGQPVLIPGTMGTASYVLAGVPGGDAFFSTCHGAGRVLSRHQAARAVTGRELLARLEAG
GIAVRPRSLRGLSEETPEAYKDVGEVVAASEGAGLCRTVARLVPLGVLKG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggaactggtccaggaagccgaccaccgcttccgcatcgaaccgcggggcgcgatgcgc
gtgcccggggtggtcttcgcgtcccgggccttgctgagggacgccgagaagtcgctggaa
caggtggccaacgtggccacgctgccgggcatcgtcggcgcgtcgtacgccatgccggac
atccactggggctacggcttccccatcggcggcgtcgccgccaccgacgtggaccagggt
ggtgtcgtctcgcccggcggcgtcggcttcgacatctcctgcggggtgcgcctgctggcc
gccgacaccgaccggcaggccctcgaagccgaactgcccgcggtcatggacggcctggac
cggtcgatcccgcgcggcgcgggacccggcggcgtgtggaagccgtccggcacaggacag
ctggagcgcattctgcgcggcggctcccggtacgccgtggaggaggggtacggcgaggag
cgcgacctgatccgttgcgaggacggcggggcggtcgccgacgccgacgtctccgaggtc
agccggcgggcgcgggagcgggggctgggccaggtgggcagcctggggtccgccaaccac
ttcctggaggtgcagtgcgtcgacgaggtgtacgacgagacggccgccgccgcgttcggg
ctcgccgtcggccaggtgtgcgtgatgatccactgcggttcacgcggcctcggccaccag
atctgcaccgatcacgtccgggcgatggaccgcgccatggcccgctacggcatcaccgtc
cccgaccggcaactggcctgcaccccggtcgactcgcccgaggggcaggcgtatctcggc
gcgatggccgccgcggccaactacggccgggccaaccgccagctgctgtccgacgcggcc
cgtcggaccttccgccgcagcgcgggcgcccgcctgtccctggtgtacgacgtgtcccac
aacctcgccaagatcgagacccatacggtggccggagcgcggcgcaggctgtgcgtgcac
cgcaagggagccacgcgcgccttcccgcccggccatcgggacctgcccgaggatctgcgg
gaggtcggccagccggtactgatcccgggaacgatgggcacggcctcgtacgtcctggcc
ggcgtgcccggcggtgacgcgttcttctccacgtgccacggcgctgggcgggtgctgagc
cgtcaccaggccgcacgcgcggtcaccgggagggaactgctggcccggctggaagcgggg
ggcatcgcggtgcgcccccggtcgctgcgcggcctgtcggaggagacaccggaggcgtac
aaggacgtgggcgaggtggtcgcggccagcgagggcgcggggctgtgccgcaccgtcgcc
cggctggtgccgctcggtgtgctgaagggctga
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