Streptomyces sp. NL15-2K: Q4V64_24810
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Entry
Q4V64_24810 CDS
T09250
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kbu
Streptomyces sp. NL15-2K
Brite
KEGG Orthology (KO) [BR:
kbu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kbu03019
]
Q4V64_24810 (hrpA)
Enzymes [BR:
kbu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Q4V64_24810 (hrpA)
Messenger RNA biogenesis [BR:
kbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Q4V64_24810 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
AAA_16
NACHT
SLFN-g3_helicase
PhoH
MetJ
TsaE
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
WKX10549
LinkDB
All DBs
Position
5537596..5541594
Genome browser
AA seq
1332 aa
AA seq
DB search
MSTHPAPGAPALGTLAPRLTELSLRDAHRLGRRLEGARKIRKPEARAVVLGEIEAEVAKA
EARMGERRARVPAVTYPAQLPVSQKKDEIAAAIRDHQVVIVAGETGSGKTTQIPKICLEL
GRGVRGMIGHTQPRRIAARTVAERVAEELDTPLGEAVGWKVRFTDQVNPDGTFVKLMTDG
ILLAEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPER
FSRHFGDAPIVEVSGRTYPVEVRYRPLLEEDGEDSDRDQITAICDAVEELQAEGKGDILV
FLSGEREIRDTADALEKKRYPRAGGANWQGTEVLPLYARLSHAEQHRVFQPHTGRRIVLA
TNVAETSLTVPGIKYVIDPGFARISRYSHRTKVQRLPIEPISQASANQRKGRCGRTSDGV
CIRLYSEDDFNARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQ
LLQELGALDPAQKDVRKRLTDTGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSI
QDPRERPADKQTQADQQHARFKDETSDFLAYLNLWRYIREQQKERGSSSFRRMCKQEYLN
FLRIREWQDIYTQLRTVAKQMGLHLEEPAAGTDAPADRIHVSLLAGLLSHIGMKDVKDGN
KNEYLGARNAKFAIFPGSALFKKTPRFVMSAELVETSRLWARVNAKIEPEWVEPLAEHLL
KRTYSEPHWEKDQAAVMAYEKVTLYGVPIVAQRKVNYGRIDPEISRELFIRNALVEGDWR
THHKFFADNRKLLSEVEELEHRARRRDIVVDDDTLFDFYDQRVPEHVVSGAHFDSWWKHK
RHEQPDFLDFEREMLIRESAEAVTKDDYPDTWRQGPLKFRVTYQFEPGADADGVTVHIPL
QVLNQVTDEGFDWQIPGLREDVVTELIRSLPKPIRRHYVPAPNFAGRFLDTAVPLQEPLT
TTMARELKRMVGVPFTADDFDWSKVPDHLRITFRIVDERRRKLAEDKDLEALKLRLKPKA
RQALSQAAAATAERQGGESLERKGLTDWTIGSLTRVFETRRAGQPVKAYPALVDDGPTAD
TVSVRLFDTEAEQQQAMWKGTRRLILRNIPVNPAKFASDKLTNPQKLALSANPHGSVQAL
FDDCAMAAADKLIGDFGGPAWDEESYRKLYDKVRAEIVDTTVRAVGQVQQVLAAWQACER
RLKAVRSPVLLPNLQDVRKQLDALVKPGFVTEAGLRRLPDLMRYLVAADRRLQQMPTNVQ
RDTTRMGKVHEMQDEYAWLLEQMPQGRPIPSSVLDIRWMIEELRVSYFAHALGTAYPVSD
KRIVKAIDAAVP
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgtctacccaccctgcccccggcgcccccgctctcggcactctcgccccccgcctgacc
gagctctccctgcgcgatgcgcaccggctcgggcgcaggctcgaaggtgcgcgcaagatc
cgtaagcccgaggcccgggccgtcgtgctcggcgagatcgaggcggaggtcgcgaaggcc
gaggcgcggatgggtgagcggcgtgcccgtgtgcccgccgtgacctaccccgcgcaactg
cccgtcagccagaagaaggacgagatcgcggccgccatccgtgatcaccaggtcgtgatc
gtcgccggtgagaccgggtccgggaagacgacccagatcccgaagatctgccttgagctg
gggcggggggtccggggcatgatcgggcatacgcagccccgtcgtatcgccgcccgtacc
gtcgccgagcgcgtcgccgaggagctcgacaccccgctgggtgaggcggtcggctggaag
gtgcggttcaccgaccaggtgaacccggacggcaccttcgtcaagctgatgaccgacggc
atcctgctcgccgagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatc
gacgaggcccatgagcggtccctgaacatcgacttcctgctggggtatctcgcccagctg
ctgcccaagcggccggatctcaaggtcgtcatcacttccgcgaccatcgatcccgagcgt
ttctcccggcacttcggcgacgcaccgatcgtcgaggtcagcgggcggacgtatcccgtc
gaggtgcgataccggcctctcctggaggaggacggcgaggactccgaccgggaccagatc
accgccatctgcgacgccgtcgaggagctccaggccgagggcaagggcgacatcctcgtc
ttcctctccggcgagcgggagatccgggacacggcggatgcgctggagaagaagaggtac
ccccgcgccggaggcgctaattggcagggcacggaggtgctgccgctgtatgcccggctc
tcccacgccgagcagcaccgcgtcttccagccccacaccggccgcagaatcgtcctggcg
accaatgtcgccgagacctccctcaccgtcccgggcatcaagtacgtcatcgaccccggc
ttcgcccggatctcccggtacagccaccgcaccaaggtccagcggctgcccatcgagccg
atctcccaggccagcgccaaccagcgcaagggccgctgcggacggaccagcgacggtgtc
tgcatccggctgtacagcgaggacgacttcaacgcccggccggagttcaccgacgcggag
atcctccgtacgaacctcgcctccgtcatcctgcagatgaccgccgccggcctcggcgac
atcgagaagttccccttcatcgacccgccggaccaccgcaacatccgtgacggcgtccag
ctcctccaggagctcggcgcgctcgacccggcgcagaaggacgtacgcaagcggctcacc
gacaccggccgcaagctcgcgcagctccccgtcgacccccgcctggcccgtatggtcctg
gaggccgacaagaacggctgtgtccgcgaggtcatggtcatagcggccgcgctgtccatc
caggacccgcgcgaacgccccgccgacaagcagacccaggccgaccagcagcacgcccgc
ttcaaggacgagacgagcgacttcctcgcctatctcaacctgtggcgctacatccgcgag
cagcagaaggagcgcggctcgtcgtccttccggcgcatgtgcaagcaggagtacctcaac
ttcctgcgcattcgtgaatggcaggacatctacacgcagttgcggaccgtcgccaagcag
atgggcctgcatctcgaggagcccgcggcgggaaccgacgcccctgccgaccgcatccac
gtctccctcctggccggcctgctctcgcacatcggcatgaaggacgtgaaggacggcaac
aagaacgagtacctgggtgcgcggaacgccaagttcgcgatcttccccggctcggccctc
ttcaagaagacaccgcgtttcgtgatgtcggcggagctggtggagacctcccgcctctgg
gcccgtgtcaacgccaagatcgagccggagtgggtcgaaccgctcgccgagcacctgctc
aagcggacgtacagcgaaccgcactgggagaaggaccaggcggccgtgatggcgtacgag
aaggtcacgctgtacggcgtcccgatcgtcgcccagcggaaggtgaactacggccggatc
gatccggagatctcccgcgagcttttcattcgcaacgccctggtcgagggcgactggcgc
acgcaccacaagttcttcgccgacaaccgcaaactcctcagcgaggtcgaggagctggag
caccgggcccggcgccgggacatcgtggtcgacgacgacaccctcttcgacttctacgac
cagcgggtccccgaacacgtcgtctccggcgcccacttcgactcctggtggaagcacaag
cggcacgagcagcccgacttcctcgacttcgagcgggagatgctcatccgtgagtcggcg
gaggcggtcaccaaggacgactatcccgacacctggcggcagggaccgctgaagttccgt
gtcacctaccagttcgagccgggcgcggacgcggacggtgtgaccgtccacatcccgctc
caggtcctcaaccaggtcacggacgagggcttcgactggcagatcccgggcctgagggaa
gacgtcgtcaccgagctgatccggtccctccccaagccgatccgccgtcactacgtgccc
gcgccgaacttcgcggggcggttcctggacacggcggtgccgttgcaggagccgctgacc
acgaccatggcgcgcgagctcaagcgcatggtcggagtccccttcaccgccgacgacttc
gactggtcgaaggtccccgaccacctgcgcatcaccttccggatcgtcgacgagcgccgc
cgcaagctggccgaggacaaggacctggaggcgctgaagctcaggctgaagccgaaggcg
aggcaggccctgtcgcaggcggcggccgcgacggccgaacgccagggcggcgagtccctg
gaacgcaagggcctgaccgactggacgatcggctccctcacccgcgtcttcgagacccgc
cgcgccggccagccggtcaaggcgtacccggcgctggtcgacgacggaccgacggcggac
accgtctcggtacggctcttcgacacggaggcggagcagcagcaggcgatgtggaagggc
acgcggcggctcatcctgcgcaacatcccggtcaacccggcgaagttcgcgtccgacaag
ctgacgaacccccagaagctcgccctgtccgcgaatccgcacggctccgtccaggccctg
ttcgacgactgcgcgatggccgcggcggacaagctgatcggggacttcggggggccggcg
tgggacgaggagtcgtaccggaagctgtacgacaaggtgcgcgccgagatcgtcgacacg
acggtccgtgcggtggggcaggtgcagcaggtgctggcggcctggcaggcctgtgagcgc
cgcctgaaggccgtacggagccctgtgctgctgccgaacctccaggacgtacgcaagcag
ctggacgccctcgtgaagccgggcttcgtgacggaggcgggtctacggcgtcttcccgac
ctgatgcgctatctggtcgccgcggaccgacgcctccagcagatgccgacgaacgtccag
cgggacaccacgcgcatgggcaaggtccacgagatgcaggacgagtacgcgtggctcctg
gagcagatgccgcagggccgcccgatcccgtcctcggtcctggacatccgctggatgatc
gaggagctccgggtcagctatttcgcccacgcgctcggtacggcgtacccggtctccgac
aagcggatcgtgaaggcgatcgacgcggcggtgccgtaa
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