Streptomyces sp. NL15-2K: Q4V64_35925
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Entry
Q4V64_35925 CDS
T09250
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
kbu
Streptomyces sp. NL15-2K
Pathway
kbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q4V64_35925 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kbu03021
]
Q4V64_35925 (rho)
03019 Messenger RNA biogenesis [BR:
kbu03019
]
Q4V64_35925 (rho)
Transcription machinery [BR:
kbu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Q4V64_35925 (rho)
Messenger RNA biogenesis [BR:
kbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Q4V64_35925 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
ResIII
AAA_22
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
WKX16258
LinkDB
All DBs
Position
7934559..7936646
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AA seq
695 aa
AA seq
DB search
MSDTTDLMGARVEETAAAPATDASAPATGAGSRRRRGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQASGGAAAPKADAATETKPKRRATSKARTGEESTAAKKAAAKAEA
PAEKAVAQQQIEIPGQPAGGPSRDGGTSRASTAERGGEAERGGEDAPAERRRRRATADAG
SPSAATETVAAEAKSEPKAETPAPQSQQPQGDAGEGGEGRRRDRRERGRDRGDRDRDRGD
RDRDRRGKGDDQPGQGGQRQQSQQQGGGRQDRQRDTGPQDDDDFEGGRRGRRGRYRDRRG
RRGRDDMASEPQITEDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLR
KGDHITGAVRQPKEGERREKFNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLET
DPGILTTRIIDLVAPIGKGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDER
PEEVTDMQRSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGR
AYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIF
EEFKGTGNAELKLDRKLADKRIFPAVDVDASGTRKEEILLAPDELGIVWKLRRVLHALDQ
QQAVELLLDKMKQTKSNAEFLMQIQKTTPTPGNGD
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagaccgctgccgcgcccgcc
acggacgcctccgcgcctgccaccggtgccggctcccggcggcgccgcggtaccggcctc
gagggcatggtgctggccgagctgcagcaggtcgcatccggcctcggcatcaggggcacc
gcgcgtatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggcctcagggggt
gccgcggctcccaaggccgacgccgccaccgagaccaagccgaagcgccgggccacctcc
aaggcccgtaccggtgaggagtccaccgccgcgaagaaggcggcggccaaggccgaggcg
cccgccgagaaggccgtggcccagcagcagatcgagatccccggccagccggccggcggc
ccctcccgcgacgggggtacctcccgcgcgagcacagccgagcgcgggggagaagccgag
cgtgggggagaggacgcccccgccgagcgccgtcgtcgccgtgccaccgccgacgccggc
agcccgtccgccgcgaccgagacggtcgccgccgaggcgaagagcgagcccaaggccgag
acgcccgccccgcagtcccagcagccgcagggcgacgccggtgagggcggcgagggccgc
cgtcgtgaccgccgtgagcgcggccgggaccggggggaccgggaccgtgaccggggggac
cgtgaccgggaccgccggggcaagggcgacgaccagccgggtcagggcggccagcggcag
cagagccagcagcagggcggcggccgtcaggaccgccagcgcgacaccggtccgcaggac
gacgacgacttcgagggcggccgtcggggccgtcggggccgttaccgtgaccgccgtggc
cgtcgtggccgcgacgacatggcctccgagccgcagatcaccgaggacgacgtcctgatc
ccggtcgcgggcatcctcgacatcctcgacaactacgccttcatccgtacgtccggctac
ctgcccggtccgaacgacgtgtacgtctccctcgcccaggtccgcaagaacggcctgcgc
aagggtgaccacatcaccggtgccgtgcgtcagcccaaggaaggcgagcggcgcgagaag
ttcaacgcgctggtgcgtctggactccgtcaacggcatggcgcccgaacacggccgtggc
cgcccggagttcaacaagctgacgccgctgtacccgcaggaccggctccgcctggagacg
gacccgggcatcctcaccacccgcatcatcgacctcgtcgcgccgatcggtaagggccag
cgcggtctgatcgtggccccgccgaagaccggcaagaccatgatcatgcaggcgatcgcc
aacgcgatcacgcacaacaaccccgagtgccacctgatggtcgtcctcgtcgacgagcgt
cccgaagaggtcaccgacatgcagcggtcggtcaagggcgaggtcatctcctcgaccttc
gaccgtccggccgaggaccacaccacggtcgcggagctcgccatcgagcgcgccaagcgg
ctggtcgagctcggccacgacgtggtcgtgctgctcgactcgatcacgcgtctgggccgt
gcgtacaacctggccgcgcccgcttccggccgcattctgtccggtggtgtcgactcgacg
gcgctgtacccgccgaagcgcttcttcggtgcggcgcggaacatcgaggacggcggttcg
ctgaccattctcgccaccgcgctggtggacaccgggtcccgcatggacgaggtgatcttc
gaggagttcaagggcacgggtaacgccgagctcaagctcgaccggaagctcgcggacaag
cgcatcttccctgcggtggacgtggacgcgtccggtacccgtaaggaagagatcctgctc
gctcccgacgagctgggcatcgtctggaagctgcggagggtgctgcacgccctcgaccag
cagcaggcggtcgaactgctcctcgacaagatgaagcagacgaagtcgaacgccgagttc
ctgatgcagatccagaagacgacgccgacgccgggcaacggcgactag
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