Kosakonia calanthes: AAEY27_20950
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Entry
AAEY27_20950 CDS
T10644
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kca Kosakonia calanthes
Pathway
kca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AAEY27_20950 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kca03021
]
AAEY27_20950 (rpoC)
03400 DNA repair and recombination proteins [BR:
kca03400
]
AAEY27_20950 (rpoC)
Enzymes [BR:
kca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AAEY27_20950 (rpoC)
Transcription machinery [BR:
kca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AAEY27_20950 (rpoC)
DNA repair and recombination proteins [BR:
kca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AAEY27_20950 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WZV98074
UniProt:
A0ABZ3B4H4
LinkDB
All DBs
Position
complement(4481958..4486181)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLDQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDANGEFVANTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDILKPGTADILVPRNTLLHEQWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVITEVAGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIANAGSSDFLEGEQVEYSRVKIANRDLEANGKIAATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtcttttggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgaacgtgacggccttttctgtgcgcgt
attttcgggccagtaaaagactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgtgatttgtgagaagtgcggcgttgaagtgacccagactaaagtgcgtcgtgag
cgcatgggccacatcgaactggcatctccgaccgcgcacatttggttcctgaaatctctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcggtatgaccaatctggaacgtaaccagatcctg
accgaagaacagtacctggacgcgctggaagagttcggtgatgaattcgacgcgaaaatg
ggcgcagaagcgatccaggccctgctgaaaagcatggatctggaccaggaatgcgaacag
ctgcgcgaagagctgaacgaaaccaactccgaaaccaaacgtaagaagctgaccaagcgt
atcaaactgctggaagccttcgtacagtctggtaacaaaccggagtggatgatcctgacc
gttctgccagtgctgccgccggacctgcgtccgctggttccgctggacggtggtcgtttc
gcaacgtcggatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggacctggcggcgccggacatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggttgacgccctgctggataacggccgtcgcggtcgtgcgatcaccggttccaac
aaacgtccgctgaaatctttggccgatatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttccgtcatcaccgtaggtccatac
ctgcgtctgcatcagtgcggcctgccgaagaaaatggcactggaactgttcaaaccgttc
atttacggcaagctggaactgcgtggcctcgccaccaccatcaaagccgcgaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcaatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggcagttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtctccggcgaacggcgaaccaatcatc
gttccgtctcaggacgtggtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatatgaaaaagacgctaac
ggcgagttcgtagcgaacaccagcctgaaagacacgaccgttggccgtgccattctgtgg
atgatcgttccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagca
atctccaaaatgctgaacacctgttaccgcattctgggcctgaaaccgaccgttatcttc
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgtgggt
attgatgacatggtcatcccggagaagaaacacgagatcatcagcgaagcggaagctgaa
gttgctgagattcaggagcagttccagtctggtctggtaaccgctggcgaacgctataac
aaagttatcgatatttgggccgcggcgaacgatcgcgtatccaaagcgatgatggacaac
ctgcaaactgaaaccgttattaaccgtgacggcgttgaagagcagcaggtttcctttaac
agcatctacatgatggccgactccggtgcgcgtggttccgcagcccagattcgtcagctt
gcgggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacggcgaactccggttacctgacgcgtcgtctg
gtagacgtggcgcaggatctggttgtcaccgaagacgattgtggcaccctcgaagggatc
accatgacgccggttatcgaaggtggcgatgttaaagagccgctgcgcgatcgcgttctg
ggtcgtgtgactgctgaagacattctgaagccgggcaccgcagatattctggttccgcgc
aacacgctgctgcacgaacagtggtgtgacctgctggaagcgaactctgttgactccgtc
aaagtgcgttccgttgtatcttgtgacaccgactttggtgtgtgtgcccactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagccatcggcgttatcgcggca
cagtccatcggtgaaccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgtctg
agcaatgcgaagtcggttgttaactccagcggtaaactggttgtcacctcccgtaacact
gagctgaaactgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
gcggtaatggcgaagggtgatggcgagcaggttgccggcggtgaaaccgttgcaaactgg
gatccgcacaccatgccggttatcactgaagtggctggtttcatccgcttcacggacatg
atcgatggtcagacgattactcgtcagaccgacgaactgaccggtctgtcttcgctggtg
gttctggactccgcagaacgtaccgcgggcggtaaagacctgcgtccggcactgaaaatc
gttgacgccaatggcaacgacgtactgatcccaggcaccgatatgcctgcacagtacttc
ctgccgggtaaagcgattgttcagttggaagatggcgttcagatcagctccggtgacacc
ctggcgcgtattccgcaggaatccggcggtaccaaggatattaccggtggtctgccgcgc
gttgcggacttgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggcatcatttccttcggtaaagaaaccaaagggaaacgccgtctggtgatcacgccggtt
gacggtagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtgtttgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgacggtccggaagcaccgcacgacatt
ctgcgtcttcgtggcgtacacgcggtaacgcgttatatcaccaacgaagtacaggacgtt
taccgtctgcagggcgttaagatcaacgataagcacattgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcgctaacgcaggaagttccgacttcctggaaggtgagcaggtt
gaatactctcgcgtcaagatcgctaatcgcgacctcgaagcgaacggcaaaatcgctgca
acttatgcacgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tccgcggcatcgttccaggagaccactcgtgtgcttaccgaagcagccgtcgcgggcaaa
cgcgatgaactgcgcggcctgaaagagaacgtgatcgtgggtcgtctgatcccggccggt
accggttacgcgtaccaccaggatcgtatgcgccgtcgcgccgctggcgaactgccagca
gcaccgcaggtgactgcggaagatgcgagcgcaagcctggcagaactgctgaacgcaggt
ctgggtggctcagacaacgagtaa
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