Kitasatospora cathayae: O1G21_25325
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Entry
O1G21_25325 CDS
T10326
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
kch Kitasatospora cathayae
Pathway
kch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O1G21_25325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kch03019
]
O1G21_25325
Messenger RNA biogenesis [BR:
kch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O1G21_25325
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Cuticle_1
Anti-Pycsar_Apyc1
Lactamase_B_6
YicC-like_C
Motif
Other DBs
NCBI-ProteinID:
WBP88828
UniProt:
A0ABY7Q7Y8
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Position
5670604..5672289
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AA seq
561 aa
AA seq
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MSHPHPELGAPPALKEGALRITPLGGLGEIGRNMTVFEYGDRILIVDCGVLFPEDEQPGV
DLILPDFSYIRDRLDKVDGIVLTHGHEDHIGAVPFLLRENPDIPLIGSKLTLALIEAKLA
EHRIRPYVLEVKEGQRERIGPFDCEFIAVNHSIPDALAVAVRTPAGMVVATGDFKMDQLP
LDGRLTDLPTFAKLAEEGMDLLLVDSTNAEVPGFIPHERDISAALRNVFANADRRIIVAS
FASHVHRIQQVLDAAHEYGRKVAFVGRSMVRNMGIARDLGYLKVPGNLIVDVKQLDDLPE
KEVVLICTGSQGEPMAALSRMANRDHQIRIVEGDTVVLASSLIPGNENAVYRVINGLTRW
GAKVVHKGNAKVHVSGHASAGELLYFFNICKPRNLMPVHGEWRHLRAAAELGIATGVPRN
RVVIAEDGVCVDLEKGVARIVGKVQAGYVYVDGASVGDITEASLKDRKILGEEGFISVFV
AVDSTNGKIVGGPTIQARGSGIEDNAFVPVAAKLQEALDRSASDGVLEPRQVQQLVRRTI
GKWVADNYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagccacccgcatcccgagctcggcgcgcccccggccctgaaggagggcgccctccgc
atcactccgctcggcggcctcggcgagatcggccgcaacatgacggtcttcgagtacggg
gaccggatcctgatcgtcgactgcggcgtcctcttccccgaggacgagcagcccggagtg
gacctgatcctcccggacttcagctacatccgggaccgcctcgacaaggtcgacggcatc
gtcctcacccacgggcacgaggaccacatcggcgccgttcccttcctcctccgggagaac
ccggacatcccgctgatcggttcgaagctcaccctcgccctgatcgaggccaagctcgcc
gagcaccggatccggccgtacgtgctggaggtgaaggagggccagcgcgagcgcatcggc
cccttcgactgcgagttcatcgcggtcaaccactccatcccggacgccctcgccgtggcc
gtccgcacccccgccggcatggtcgtggccaccggcgacttcaagatggaccagctgccg
ctggacggccgcctgaccgacctgccgaccttcgccaagctggccgaggagggcatggac
ctgctgctggtggactccaccaacgccgaggtccccggcttcatcccgcacgagcgggac
atctcggcggccctgcggaacgtcttcgccaacgccgaccggcgcatcatcgtcgcttcc
ttcgccagccacgtgcaccgcatccagcaggtgctggacgccgcccacgagtacggccgc
aaggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcccgtgacctcggc
tacctgaaggtccccggcaacctgatcgtggacgtcaagcagctggacgacctcccggag
aaggaggtcgtgctgatctgcaccggttcgcagggcgagccgatggcggcgctgtcccgg
atggccaaccgcgaccaccagatccgcatcgtcgagggcgacaccgtcgtcctggcctcc
tcgctcatcccgggcaacgagaacgccgtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaaggtcgtgcacaagggcaacgccaaggtgcacgtctccgggcacgcctcggcc
ggcgagctgctgtacttcttcaacatctgcaagccgcgcaacctgatgccggtccacggc
gagtggcgccacctgcgggccgccgccgagctgggcatcgcgaccggcgtcccgcgcaac
cgcgtggtcatcgccgaggacggcgtctgcgtcgacctggagaagggcgtcgcccggatc
gtcggcaaggtgcaggccggctacgtctacgtggacggcgcctcggtcggcgacatcaca
gaggcctcgctcaaggaccgcaagatcctcggcgaggagggcttcatctcggtcttcgtc
gcggtcgactcgaccaacggcaagatcgtcggcggcccgaccatccaggcccgcggctcc
ggcatcgaggacaacgccttcgtgccggtcgccgccaagctccaggaggccctggaccgc
tcggcgagcgacggcgtgctggagccccgccaggtgcagcagctcgtccgccggaccatt
ggcaagtgggtcgcggacaactaccgccgccggccgatgatcctgccggtcgtcgtcgag
gtctga
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