Kitasatospora cathayae: O1G21_25670
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Entry
O1G21_25670 CDS
T10326
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kch Kitasatospora cathayae
Pathway
kch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O1G21_25670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kch03019
]
O1G21_25670
03009 Ribosome biogenesis [BR:
kch03009
]
O1G21_25670
Enzymes [BR:
kch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
O1G21_25670
Messenger RNA biogenesis [BR:
kch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O1G21_25670
Ribosome biogenesis [BR:
kch03009
]
Prokaryotic type
rRNA processing factors
O1G21_25670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
WBP88888
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All DBs
Position
5750318..5753806
Genome browser
AA seq
1162 aa
AA seq
DB search
MLDNTDPQQSAATEQNGTAVTGGEGASAAPPRRRRRAVSRPAGTPQGAATEAAETVLPAE
AHEAPAAAAPAAEAAPVAEKPVRARRTRKRAEAPAGAPEETAIVVTAPETEETKTEEKAE
KPVRARRTRKKAEAPVEAPVVEEPAVEAAAPAEAPVAEPVAEEAPAAPARRTRRRRVVEA
APVVEAPVEEPVAEEPAVEEEPAEEEAVEAAAEPAAAPAPAPAPAAEAEPHHRVRRRAVR
PATAVFQAPVFQEPAPYVAPTAPQQPAAVTAPVEAPAAAERGDEDEYEYSGVGRRRRVRT
RVEPGRRKPVAEAPVKAPAKAPVEAPAVEAPAVEAPAAGPETEGEWEEDGRPSRRRRRGG
RRRRRGEAEEFEAAEAVETEQPAVEEPARAVAEEEDEEEDELASGLSSSRRRRRRRRRSG
EAGAVETAETTEDGVRTVVKVREPRRRSTEPSFDPDEVQSIKGSTRLEAKKQRRREGREL
GRRRVPIITEAEFLARRESVERVMVVRQNGQRTQIGVLEDGVLVEHYVNKEQATSYVGNV
YLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFGALGHGGPRRIESVLKSGQSVLVQVS
KDPIGHKGARLTSQISLPGRYLVYVPEGSMTGISRKLPENERARLKQILKKIVPDDAGVI
VRTAAEGASEEELTRDVQRLQQQWEDIQKKAATGNAPALLYGEPDMTVRVVRDIFNEDFT
KVIVSGDEAWKTIHEYVSNVAPDLAERLQRWTSEVDVFATYRIDEQLMKALDRKVWLPSG
GSLVIDRTEAMVVIDVNTGKFVGQGGNLEETVTRNNIEAAEEIVRQLRLRDLGGIIVIDF
IDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSEACVHC
NGRGVIVHMEQPSAHVHAPVAAAAEAGPGGGKRRRRGKGGAAHEEPQAVEAVVEAVVEPA
EPVREEIEGQLALEVPGVEAEAAEAAAVETVVVEAPKAEEAPVAEAPAAAPAGRPRRRAV
RKATAPAGAPQAAEIVVLQAKADAALEAALAAAAPATEAAVEAAAQAAAEAAPEAAEEVV
VAEAVVEEAAEAPAAEAPAEEAPAEEAPAPKKRAARKTAAKKTAAKKTTAAAKKTTARKT
ATKRTSAAAKKAAAAEGDTAAE
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgctcgataacaccgatccgcagcagtctgcggccacggaacagaacggaaccgccgtg
accggtggcgagggcgcgtccgccgcgccgccgcgccgtcgtcgccgggcggtgtcccgc
ccggcgggcaccccgcagggtgcggccaccgaggcggccgagacggtcctgccagccgag
gcgcacgaggcgcccgccgccgcggccccggcggccgaggccgccccggtggcggagaag
ccggtccgggcccgccggacccgcaagcgggccgaggccccggcgggtgcgccggaggag
accgcgatcgtggtcaccgcgccggagaccgaggagacgaagaccgaggagaaggcggag
aagcctgttcgggcccgccggacccgcaagaaggccgaggccccggtcgaggcgcccgtg
gtcgaggagcccgcggtcgaggccgccgctcccgccgaggcccccgtcgccgagccggtg
gccgaggaggccccggccgctccggcccgccgtacccgccgccgtcgcgtggtcgaggcc
gcgccggtggtcgaggccccggtcgaggagccggtggccgaggagcccgccgtcgaggag
gagcccgccgaggaggaggccgtcgaggccgccgccgagccggccgccgccccggccccg
gcccccgctccggccgccgaggccgagccgcaccaccgggtgcgccgccgcgcggtccgt
ccggccaccgcggtcttccaggccccggtcttccaggagcccgcgccctacgtcgcgccg
accgcgccgcagcagcccgccgccgtcacggcgccggtcgaggccccggccgccgccgag
cgcggggacgaggacgagtacgagtacagcggtgtcggccgccgccgtcgggtccgcacc
cgggtcgagccgggccgccgcaagccggtcgccgaggcgccggtgaaggcccccgccaag
gcccccgtggaggccccggccgtcgaggcgcccgccgtggaggcacccgccgccggtccg
gagaccgagggcgagtgggaggaggacggccgtccgtcgcgccgtcgccgtcggggcggc
cgccgccgtcgccgtggcgaggccgaggagttcgaggccgccgaggccgtcgagaccgag
cagcccgccgtcgaggagccggcccgggccgtcgccgaggaggaggacgaggaggaggac
gagctggcctccggcctgtcctcgtcccgccgtcgccgccgtcgccgccgccgcagcggc
gaggccggcgccgtcgagaccgccgagaccaccgaggacggcgtccgcacggtggtgaag
gtgcgcgagccgcgccgccgctccaccgagccgtccttcgacccggacgaggtgcagtcc
atcaagggctcgacccgcctggaggcgaagaagcagcgccgccgcgagggccgcgagctg
ggccgccgccgggtgccgatcatcaccgaggccgagttcctggcccgccgcgagtcggtc
gagcgcgtcatggtggtgcgccagaacggtcagcgcacccagatcggcgtgctcgaggac
ggcgtgctggtcgagcactacgtcaacaaggagcaggccacctcgtacgtcggcaacgtc
tacctgggcaaggtccagaacgtgctgccgtccatggaggccgcgttcgtcgacatcggc
aagggccgcaacgcggtgctgtacgccggtgaggtcaacttcggtgcgctgggccacggt
ggcccgcgccggatcgagtcggtgctgaagtccggccagtccgtgctggtgcaggtctcc
aaggacccgatcggccacaagggcgcccgcctgaccagccagatctcgctgcccggccgc
tacctggtgtacgtgcccgagggctcgatgaccggcatctcgcgcaagctgcccgagaac
gagcgcgcccgcctgaagcagatcctcaagaagatcgtcccggacgacgcgggcgtcatc
gtgcgcaccgccgccgagggcgcctccgaggaggagctgacccgcgacgtccagcgcctg
cagcagcagtgggaggacatccagaagaaggccgcgaccggcaacgccccggcgctgctg
tacggcgagccggacatgaccgtccgggtcgtgcgcgacatcttcaacgaggacttcacc
aaggtcatcgtctccggcgacgaggcgtggaagaccatccacgagtacgtctccaacgtg
gccccggacctcgccgagcggctccagcggtggacctccgaggtggacgtgttcgccacc
taccggatcgacgagcagctgatgaaggcgctggaccgcaaggtctggctgcccagcggc
ggttcgctggtgatcgaccgcaccgaggcgatggtcgtcatcgacgtcaacaccgggaag
ttcgtcggccagggcggcaacctggaggagacggtcacccggaacaacatcgaggcggcc
gaggagatcgtgcgccagctgcggctgcgcgacctcggcggcatcatcgtgatcgacttc
atcgacatggtcctggagtccaaccgcgacctggtgctgcgccgcctgctggagtgcctg
ggccgggaccggaccaagcaccaggtggccgaggtcacctcgctgggcctggtccagatg
acccgcaagcgggtcggccagggcctgctggagtccttctccgaggcctgcgtgcactgc
aacggccgcggtgtgatcgtccacatggagcagccgagcgcccacgtccacgctccggtg
gccgcggccgccgaggcgggcccgggcggcggcaagcgccgtcgccggggcaagggcggc
gcggcccacgaggagccgcaggccgtcgaggccgtcgtcgaggcggtcgtggagcccgcc
gagccggtgcgcgaggagatcgagggccagctggccctggaggtcccgggcgtcgaggcg
gaggccgccgaggccgcggccgtcgagaccgtggtggtcgaggcgccgaaggccgaggag
gcgccggtggccgaggcccccgccgccgctccggccggccgtccgcgccgccgcgcggtg
cgcaaggcgacggctccggcgggtgcgccgcaggccgccgagatcgtggtgctgcaggcg
aaggccgacgcggccctggaggcggccctggcggccgccgccccggccaccgaagccgcc
gtcgaggctgccgcccaggccgccgccgaggctgcgcccgaggccgctgaggaggtcgtc
gtcgcggaggccgtggtcgaggaggccgccgaggcccccgccgccgaggctcccgctgag
gaggcgcccgccgaggaggccccggcgcccaagaagcgggccgcccgcaagaccgccgcg
aagaagaccgccgccaagaagacgaccgcggcggccaagaagaccaccgcccgcaagacc
gcgaccaagcggacgagcgcggcggccaagaaggccgcggccgccgagggtgatacggcg
gccgagtag
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