Candidatus Kinetoplastidibacterium crithidiae (ex Angomonas deanei ATCC 30255): CKCE_0077
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Entry
CKCE_0077 CDS
T02413
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kci
Candidatus Kinetoplastidibacterium crithidiae (ex Angomonas deanei ATCC 30255)
Pathway
kci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKCE_0077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kci03019
]
CKCE_0077
Enzymes [BR:
kci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CKCE_0077
Messenger RNA biogenesis [BR:
kci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CKCE_0077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AFZ82522
LinkDB
All DBs
Position
96779..98086
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AA seq
435 aa
AA seq
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MKEKRENKNKQILFDSFGLDQLLLNSINSIGYDTPTAIQEKAIPFILNGRDVLGAAQTGT
GKTAAFVLPIINKILPYANSSTSPARHLLRVLILVPTRELANQVYDSVVIYSKNTNLRSV
VLFGGADHYNQENNLKLGCEILVATPGRLIAHIEQGNLHLQNIEIFVLDEADRMLDMGFM
PDIDKIISKLPKNRQTLFFSATFSKFMRKIGMSYLKDPVELDITSPNSIADNVEQLSYIV
PNRFKMEAVVSILTARVLETIIIFTNTKLSTIKLTSFLRSSNIQCDSIHGDKSQLERTAV
LESFKNGILRVLVATDVAARGLDVLGISCVINFDIPHSPEDYVHRIGRTGRANNTGVAIS
LISNDEEDVLLSSIEKFTDSTILRLPLNQMKLTSNDSRLLGSGVDEQLNKKAVLLGSSAI
ASSNKEDHFNKIKIQ
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaaagagaaaataaaaataagcagattttatttgatagttttggtttagat
caacttttactaaacagcataaactccataggttatgacactccaacagcaatacaagaa
aaggctatacctttcatattgaatggaagagatgttctaggtgcagcacagactggaaca
ggaaaaacagcagcttttgttttaccaattattaacaaaatattaccatatgctaattct
agcacctctccagctcgtcatttattacgtgtcttaatattagttccaacgcgtgagctt
gcaaatcaggtttatgacagtgttgttatttatagtaaaaatactaatttgcgatctgtt
gttttgtttggaggagcagatcactataatcaagaaaataacttaaagttaggatgtgag
attcttgtagcaacgccaggaaggttgatagctcatatcgagcaaggtaatttgcattta
caaaatatagaaatttttgttcttgatgaagctgatagaatgttagatatggggtttatg
ccagatatagataaaatcataagtaaattacctaaaaatagacaaactcttttcttttca
gctacatttagtaagtttatgcgtaaaataggcatgtcttatttaaaagatccagttgaa
ttagatattactagtcctaattctatagctgataatgtagagcaattatcatatattgta
cctaatagatttaagatggaagcagttgtatctatccttacagctagagttctagaaaca
ataataatttttactaatactaaattatctaccataaaacttacatcttttttgcgatcg
agtaatattcagtgtgactctattcatggcgataagagtcaattagaaagaacagccgta
ctagaaagttttaaaaatggtattttgcgtgtgcttgttgctacagatgtagcagctaga
ggacttgatgtactaggtatttcatgtgttataaactttgatattccacatagtcctgaa
gattatgtacatagaataggaagaacgggtagagcaaacaatactggagttgccatttcc
ttaatatctaatgatgaagaagatgttttgttatcaagtattgaaaaatttacagatagt
acaatattacggttgcctttaaatcagatgaagttaacctctaatgattctagattatta
ggatctggtgttgatgaacaacttaataaaaaagcggttcttttaggctcgagcgcaatt
gcttcttctaacaaagaagatcattttaataaaattaaaatacaataa
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