Candidatus Kinetoplastidibacterium crithidiae (ex Angomonas deanei ATCC 30255): CKCE_0128
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Entry
CKCE_0128 CDS
T02413
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kci
Candidatus Kinetoplastidibacterium crithidiae (ex Angomonas deanei ATCC 30255)
Pathway
kci03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CKCE_0128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kci03400
]
CKCE_0128
Enzymes [BR:
kci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CKCE_0128
DNA repair and recombination proteins [BR:
kci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CKCE_0128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFZ82567
LinkDB
All DBs
Position
complement(146997..150461)
Genome browser
AA seq
1154 aa
AA seq
DB search
MNLSNTKNTPYTIQKLLSKLDNHKKYQYGKPYGSGLSFLVGNIKQYYKYPIIIVTHNSLE
SQQIAGEIGVLYSKLRVFNMPDWETLPYDIFSPNQSLISERLKTLYELLNNNIDVLVIPI
NAVINYISPIDFIASYSFIYKKDDFINEENLLNQFKIANYKQVSQVADFGEFCIRGSIID
IFPMGSSTAYRLDLLDNKIESIRTFNIETQCSTGYIESIEVLPGKEFPVDEKSINYFRSK
FREYFEGDPSKYSIYKNISKSNIFPGIEYYLPLFFEEKTTIFDYLQKESLFITLENINET
IEQFSRDTQDRYNFLKHDIERPILKPEDLFLDQENFYKKINNFKHLSINLKQNDEFEKIP
NISILENNLNIVKSIKETIRDKKSKIIICVDANSRKEIITNTLKTNSQINIVSHKNIESF
FNSADQIGITIAPINYGFKYISENLTVITENDLYPNTYNEKNYKKNKINKKSQEANFRDI
AELSIGDPVVHYQYGVGRYKGLVNMNVGQDQMEFLHLEYAKKTNLYVPITNLNLISRYIG
IDPENAPLHQLGSDTWEKKYKKAIQQIHDTAAELLDIYSKRALKKGHAFLSNNDDYNKFV
EDFEFTETIDQEQAIQSVLKDMSLEKPMDRLVCGDVGFGKTEVALRASFIAVSNNKQVII
LCPTTLLAEQHTQTFSKRFANWPIKISELSRMKSRKEILHTISAINDGIVDIIIGTHKIL
SSEIKFKNLGLVVIDEEHRFGVRQKEMFKNIRSEVDVLSLTATPIPRTLSMSLEGIRDFS
IITTAPQKRLPIKTFIRYQDNSIIVEAIRREIRRGGQVYFLHNEISTIHNKKDLIEQLLP
EIKVAIAHGQMLARNLENIMKDFCQKKYDVLLCTTIIENGIDIPNANTIIINRADTFGLA
QLHQLRGRVGRSHHQAYAYLLIPNEGSITSQANKRLNAIQNMEDLGSGFYLALHDLEIRG
SGEILGESQSGNIQEIGYSLYNEMLSEAIAKIKDGKETNLTHLTIPASCEINLGVSSILP
SEYCPDISARLALYKRLSHAHNEDEILKIQYEIEDRFGKLPDPAENLIITHKLRILADKL
HIKKLIVENNRIILIFEENTSADIEKIISLTKNNRNIKLSSDNKIFLLNNKDYKSKINEL
FNILNYLNNNSYIK
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
gtgaatctctctaatacgaaaaatactccatacacaattcaaaaattactatctaaatta
gataatcataaaaaatatcaatacggaaaaccttacggttcaggtttatcatttctagta
ggcaatattaaacaatattataaatatccaatcataatagttacgcataactctctggaa
tctcaacaaatagctggagagataggggtactctactccaaactacgcgtgtttaatatg
ccagactgggaaaccttaccttatgatatattttccccaaatcaaagtttaatttcagaa
agattaaaaactctttacgagttactaaacaataacattgatgttttagttatacctata
aatgcagttattaattatatatctcctattgattttatagcctcatatagttttatatat
aaaaaagatgattttattaatgaagaaaacttgcttaatcaatttaaaattgccaattat
aaacaagttagccaagtagcagactttggtgaattttgcatcagaggtagtattatagat
atatttccaatgggctcatcaacagcgtatcgattagatttattagacaacaaaatagaa
tctattaggacatttaatatagaaacacaatgtagcacaggctacattgaaagtatagaa
gtactaccaggaaaagaattccctgtagatgaaaaatcaataaattattttcgttcaaaa
tttcgtgaatactttgaaggagatccttctaagtactcgatctataagaatattagtaaa
tcaaatatatttcctggaattgaatactatttgccattattttttgaagaaaaaactaca
attttcgattacttacaaaaagaatctttatttataacattagaaaatatcaatgaaact
atagaacaattctcaagagacactcaagatcgttataattttttaaaacatgatattgaa
agacctatccttaagccagaggatctttttcttgatcaagaaaatttttacaaaaaaata
aataattttaaacatttatctattaatttaaagcagaatgacgaatttgaaaaaattcct
aatatttctatattagaaaacaatttaaatatagtaaaaagcataaaagagactattaga
gacaagaaatcaaaaattattatatgtgtagatgcaaattctaggaaagaaataataaca
aatacattaaaaacaaattcacaaataaatatagtatctcataaaaatattgaatctttt
tttaattcagcagatcaaatagggataacaatagcacctataaattatggtttcaaatat
atttcagaaaatttaactgttatcacagaaaatgatttatatcccaatacatataatgag
aaaaattataaaaaaaataagatcaataaaaaaagtcaagaagctaactttcgtgatata
gctgaactatccataggagatcctgtcgtacattatcaatatggtgttggaagatacaaa
ggattagttaatatgaatgtaggacaagatcaaatggaattcttacatttagaatatgca
aaaaaaactaatttatatgtgcctattactaacttaaatttaatttctagatatatagga
atagacccagaaaatgccccactacatcaattaggctcagatacgtgggaaaaaaaatat
aaaaaagcaattcagcaaatacatgatacagcagctgagttattagatatctattctaaa
agagctttaaaaaaaggacatgccttcttatcaaataatgatgactataacaagtttgta
gaagattttgaatttacagaaactattgatcaagaacaagctatccagtctgttttaaaa
gatatgtctttagaaaaaccaatggatagattagtatgcggagacgtaggtttcggaaaa
acagaagtagctttgagggcatcttttattgctgtttcaaataataaacaagtaattata
ctatgccctacaacattattggcagaacaacatacacaaacatttagtaaaagatttgca
aattggccaatcaaaatatctgaattatctagaatgaaatcacgcaaagaaatattacat
actatctctgcaataaacgatggtattgtagatataattataggcacacataaaatacta
tcatctgaaattaaatttaaaaatctaggtcttgtagtaatagatgaggaacatagattt
ggcgtaagacaaaaagaaatgttcaaaaatattagatctgaagttgatgtattatcgctg
actgcaacccctattcctcgtactctaagtatgtcgttagaaggaataagagatttctca
attattacaacagcgccacaaaaaagacttccaataaaaacatttataagatatcaagat
aatagcattattgtagaagctataagacgcgagataaggcgaggaggacaagtttatttt
ctacataatgaaatttctacaatacataataaaaaagacttaatagaacaattattgcca
gaaataaaagttgctattgctcatggccaaatgttggcaagaaatcttgagaatattatg
aaagatttttgtcaaaaaaaatatgatgtattactatgtacaaccataatagaaaatgga
atagatataccaaatgccaatactattataattaatagagctgatacttttggattagca
cagctgcatcaattaagaggtagagtaggacgatctcatcatcaagcatatgcttattta
ttaattcctaatgaagggtcaataactagccaggcgaataaaagacttaatgcaatccaa
aacatggaggatcttggatcaggtttttatttagctcttcacgatttggaaattagagga
tctggagaaattctaggagaatcacagtctggaaatatacaagaaataggatactcttta
tataacgaaatgctgtctgaagctatagccaaaataaaagatggaaaagaaacaaaccta
acacatttaactataccagcatcttgcgaaataaatctaggtgtctcatctattctacca
tctgaatattgtcctgatatatccgctagattagcgttatacaaaagattatctcatgct
cataatgaagatgagatacttaaaatacaatatgaaatagaagataggtttggtaaatta
ccagatccagcagaaaatctcattatcactcataagctgagaatattagccgataaatta
cacataaaaaaactcatcgtagaaaataatcgtattattttaatttttgaagaaaacaca
agtgcagatatagaaaaaataatatctctaacaaaaaataatagaaacataaagctcagt
agtgataataaaatttttctgctaaataataaagattataaatcgaagatcaatgaatta
tttaatatattaaattatttaaacaataacagctacattaaataa
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