Candidatus Kinetoplastidibacterium crithidiae (ex Angomonas deanei ATCC 30255): CKCE_0146
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Entry
CKCE_0146 CDS
T02413
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kci
Candidatus Kinetoplastidibacterium crithidiae (ex Angomonas deanei ATCC 30255)
Pathway
kci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKCE_0146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kci03019
]
CKCE_0146
03009 Ribosome biogenesis [BR:
kci03009
]
CKCE_0146
Enzymes [BR:
kci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CKCE_0146
Messenger RNA biogenesis [BR:
kci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CKCE_0146
Ribosome biogenesis [BR:
kci03009
]
Prokaryotic type
rRNA processing factors
CKCE_0146
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AFZ82585
LinkDB
All DBs
Position
complement(167192..169681)
Genome browser
AA seq
829 aa
AA seq
DB search
MKRMLFNATHPEEIRVAIVDGQKLVDLDIETSNREQRKGNIYKGVVTRIEPGLEACFINY
GEDKHGFLPFKEIAKSYFRDGIDFRNTRIQDAIKDGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEERQELKDIMEKLDVPNGMSIIARTAGIGRTIEELQ
WDLSYLLQLWNAIDQAAKENNSPVLIYLESSLIIRAIRDYFSPDINEILIDNQEIVKQAK
AFMSVVMPDNVQCVKDYQNEIPLFSRFQIEHQIETAYSRMIQLPSGGSIVIDHTEALVAI
DVNSAKSTRGADIEETALRTNLEASEEVARQLRLRDLGGLIVIDFIDMEDIKNQKNVEQK
LREALRVDRARVQIGKKISKFGLIELSRQRLRPALNEGSHITCPRCTGIGVIRDTESSAL
QVLRLIQEEAMKDATSAVYAQLPVDVATYLLNEKRNDINNIELQLNIKLVLIPNKYFETP
HYNIERIKNDDPKLEEHKTSFNLVEIPNNNLIWNIPESEEKHRPEALIKDSTPKKPAPIV
SNIKYKSLNNSNVSKNIFKKIFSWINLFNKKEITPENQHNNHKASLHEQHNSKHRNEKKY
NYKNKNQSKLLQEKQQINSIDTYNENLNKLEEDYLLSKKDKNKTKRDNQINLVENKILDH
DDKKTDALDQNNLITSNGDNDKKPNIRRRNNGYRKNQKNFNMSKNSKELSNSHEIDNIDR
TLSSEDNINNIDAQKNIEKMTSTTNKVEDNIIRTTVAINNLDLEYSKTKQDTVATTSHHT
KNLQMVETNCQSTNEQTNDVKPEVNKRLYTKNTTNYKIKKQLTQVETKN
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttatttaacgcaacacaccctgaagaaatacgtgttgcaattgtagat
ggacaaaaactagtagatttagatatagaaacgtctaaccgtgaacaacgtaaaggtaat
atatataaaggagttgtaacaagaatagaacctggtttagaagcatgtttcataaactat
ggagaagataaacatggattcctaccatttaaagaaatagcgaagagttattttagagat
ggaatagattttagaaacacaagaattcaagatgccataaaagatggtcaagaattaatt
gttcaggtagaaaaagaagaaagaggtaataaaggagctgctcttactacatttatatca
ttggctggcagatatttagtactaatgcctaataaccctagaggcggaggtgtatctaga
cgtatagaaggagaagaacgtcaagagttaaaagacataatggaaaaactagatgtgcct
aatggaatgagcataatagcaagaacagctggaattggtagaactattgaagaacttcag
tgggatttatcatatctacttcaactatggaatgcgatagaccaggcagctaaagaaaat
aattcccccgtacttatatacttagaatctagtctaattatcagggcaataagagattat
ttttcaccagatattaatgaaattttaattgacaatcaagaaattgttaagcaagctaaa
gcatttatgagcgttgtaatgcctgataatgtacaatgtgtcaaagattatcaaaatgaa
ataccattattttcaagatttcaaatagaacatcaaatagaaacagcatattctagaatg
attcaattgccatctggtggatctattgtaattgaccatactgaagctttagttgcaata
gatgtaaattctgcaaaatcaacaagaggagcagatatagaagaaactgccttaagaacc
aatctcgaagcttctgaagaagttgcgagacaattaaggttaagagatcttggcggtctt
atagtaattgatttcatagatatggaagatattaaaaatcaaaaaaatgttgaacaaaaa
cttagagaagcattaagagtcgatagagcaagagttcaaattgggaaaaaaatatcaaaa
tttggattaatagaactatcaagacagagactacgcccagcgttaaatgaaggatcacat
ataacatgtcctagatgtactgggattggcgttattagagatactgaatctagtgcccta
caagtattgaggctaattcaagaagaagcaatgaaagatgctacttcagcagtatatgca
caattaccagtagatgttgccacttatttattaaatgaaaaaagaaatgatataaacaac
attgaactgcaactaaatataaaacttgttctaataccaaataagtattttgaaacacct
cattataatatagaaagaataaaaaatgatgatccaaaactagaagaacacaaaacaagt
tttaatttagtagaaataccaaacaataacttaatatggaacataccagaatcagaagaa
aaacataggcctgaagccttaataaaagatagcactcctaaaaagccagctccaatagta
tcaaatatcaaatataaatccttgaataattctaatgttagtaaaaatatattcaaaaaa
atattttcctggataaatttattcaataaaaaagaaataactccagaaaaccaacataat
aatcataaagcatctctacatgaacaacacaactcaaaacatagaaatgaaaaaaaatat
aattataaaaataaaaatcaaagcaaattactacaagaaaaacaacagataaattctata
gatacatataatgaaaatttaaataagctagaagaggattatcttttatctaaaaaagac
aagaacaaaactaaacgtgataaccaaataaaccttgtagagaataaaattctagaccat
gatgacaaaaaaactgatgctttagatcagaataatttgataacaagtaatggcgataat
gataaaaaaccaaatatccgcagaagaaataatggttatagaaaaaatcagaaaaatttt
aatatgtctaaaaattcgaaagaattatctaattctcatgaaatagataatatagacaga
actctttcttctgaagataacattaacaatattgatgctcagaaaaatatagaaaaaatg
acatctactactaataaagttgaagataatataataagaacaacagtagctataaataat
ttagatctagaatattcaaagacaaaacaggatactgtagctactactagtcaccacaca
aaaaatcttcaaatggtagaaactaattgccaatctactaatgagcaaactaatgatgtt
aaaccagaagttaataaaagactttatacaaaaaatacaacaaactataaaataaagaaa
caactaacacaggtagaaactaaaaattaa
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