Candidatus Kinetoplastidibacterium crithidiae (ex Angomonas deanei ATCC 30255): CKCE_0212
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Entry
CKCE_0212 CDS
T02413
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
kci
Candidatus Kinetoplastidibacterium crithidiae (ex Angomonas deanei ATCC 30255)
Pathway
kci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CKCE_0212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kci03021
]
CKCE_0212
03019 Messenger RNA biogenesis [BR:
kci03019
]
CKCE_0212
Transcription machinery [BR:
kci03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CKCE_0212
Messenger RNA biogenesis [BR:
kci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CKCE_0212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
S1CSD-TOTE-2
Mor
DUF3086
SWI2_SNF2
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFZ82650
LinkDB
All DBs
Position
complement(244380..245636)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLNELKTLHVSQLLEMASNLEIDNANRLRKQELMFAIMKKRAKQGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRMNLHTGDSIEGEVRTPKEGERYFALVKVEKVN
GVLPEVVKHRIMFENLTPLHPCHNIKLEREIRSEENLTGRILDVFSPIGKGQRGLIVASP
KSGKTIMMQHIAHAIASNMPEATLIVLLVDERPEEVTEMQRTVRGEVVASTFDEPANRHV
QVAEMVIEKAKRLVEMKKDVIILLDSITRLARAYNTVIPSSGKVLTGGIDANALHRPKRF
FGAARNIEEGGSLTILGTALIDTGSRMDEVIYEEFKGTGNAEIHLERRMAEKRVYPAINL
NKSGTRREELLVKQDILQKIWVLRKFIHDMDDIEAIEFILDKMRSTKTNLDFFEMMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaaatgaactaaagactttgcatgtatcacagctattagaaatggcttctaat
ttagaaattgataatgccaatcgtctacgaaaacaagaattaatgtttgctataatgaag
aaaagagcaaaacaaggtgaacaaatttttggagatggagtattagaagtacttccagat
ggttttggattcctaaggtcaccagaaacatcatacttagccagtacagatgatatatat
atatccccttctcaaattagaagaatgaacttacatactggtgattctattgaaggtgaa
gtaagaacaccaaaagaaggtgaaagatattttgcattggttaaagttgaaaaagttaat
ggtgtattaccagaagttgtaaaacatagaattatgtttgaaaatcttacaccacttcat
ccttgtcacaatataaaattagaaagagaaatcagaagtgaagaaaatcttacaggaaga
atactagatgtattctcacctataggtaaaggacaaagaggattgatagtagcaagtcct
aaatctggaaaaactataatgatgcaacatatagcacatgctattgcatcaaatatgcca
gaagcaactttaatagtcttattagtagatgaaaggcctgaagaagtaacggaaatgcaa
cgtacagtaaggggtgaagtggtagcatcaacgtttgatgaacctgcaaatagacatgta
caagtcgctgaaatggtaattgaaaaagcaaaaagacttgtagaaatgaaaaaagatgta
attatactgctagattctattactaggttagccagagcatataatactgttataccttct
tcaggaaaagtacttacaggcggtatagatgccaatgctctacacaggccaaaaagattt
tttggggcggctagaaatatagaagaaggtggatctttaactatcttaggaacagcatta
atagataccggaagtagaatggatgaagtaatctatgaagaatttaaaggtactggtaat
gctgaaattcatttagaaagaagaatggctgaaaaaagagtttacccagctataaattta
aataaatcaggtacaagaagagaagaactcttagttaagcaagatatactacaaaaaata
tgggtgctaagaaaatttattcatgatatggatgatatagaagcaatagagtttattcta
gataaaatgcgctccacaaaaacaaatttagattttttcgaaatgatgaaaaaataa
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