Kitasatospora camelliae: ABWK59_20550
Help
Entry
ABWK59_20550 CDS
T11032
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kcm Kitasatospora camelliae
Pathway
kcm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABWK59_20550 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kcm03400
]
ABWK59_20550 (mfd)
Enzymes [BR:
kcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABWK59_20550 (mfd)
DNA repair and recombination proteins [BR:
kcm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABWK59_20550 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
XCM81131
UniProt:
A0AAU8JZ80
LinkDB
All DBs
Position
unmamed1:4529534..4533148
Genome browser
AA seq
1204 aa
AA seq
DB search
MSLSGLLDVVVRDAALAEAIEAAAAGHRQHLDLVGPPAARPFAIAALARSLAAGADAQGR
PVLAVTATGREAEDLAASLRSLLPADAVAEFPAWETLPHERLSPRSDTVGRRLAVLRRIV
HPSADDPAAGPVRVVVAPVRSVLQPQVKGLAELEPVAVQRGEQHDLEEVARRLAAAAYSR
VELVEKRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEIAEHGLWA
PPCRELLLTDEVRARAAELAAEHPGLAEILDRIAQGIAVEGMESLAPVLVDDMELLVDVL
PEGSIAVVCDPERVRTRAADLVATSQEFLQASWVAAAAGADRPIDLEAIDVSAASLWSLA
DLREHAAEIGLPWWSVSPFATSDSSVSEILEFDADTLTLGMRAVEAYRGDTARAIADAKE
RLAADWRVVMVTEGHGPAARLAEVLGNEGIPARLVADLAEAPTRDVVFVSCGSIEHGFVD
EALKLTVVTETDLSGQKSSTKDMRRMPSRRRNAIDPLALAAGDYVVHEQHGVGRYVEMVQ
RTVQGATREYLVLEYAPAKRGHPGDRLFVPSDQLDQVTKYVGGEAPTLHRLGGADWAKTK
QRAKKAVKEIAADLIKLYSARMAAPGHSFGPDTPWQRELEDAFPYAETPDQLTTIGEVKA
DMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFSTFAERYA
NFPVTVKALSRFQTDSEAKAVLEGLFEGSVDVVIGTHRLFSSETRFKDLGLVIVDEEQRF
GVEHKEQLKKLRANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYD
EKQIAAAVRRELLREGQVFYIHNRVESIDKAAARLKDLVPEARVATAHGQMGETQLEKVV
VDFWEKEFDVLVSTTIVESGIDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYM
LYPPEKPLTETAHERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDL
YMRMVGEAVAEFRESLETGGEPEEEPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIAAV
NSEEDIVHVREELTDRYGKLPEPVENLLMVAGLRLYARRCGIGDITLQGNFVRFGPVELR
ESQELRLNRLYPRTQVKAAAQQLLVPRPSTGGRIGGKPLLGRELLGWCTEFLTTMFDDLA
GARR
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgtccggactgctcgatgtcgtcgtacgggacgccgccctcgccgaggcgatc
gaggccgcggccgccggtcaccggcagcacctcgacctggtgggcccgccggccgcccgg
ccgttcgcgatcgccgcgctggcccggtcgctggccgccggggccgacgcgcagggccgc
ccggtgctggcggtgaccgccaccggccgggaggccgaggacctcgcggccagcctgcgg
tcgctgctccccgcggacgcggtggccgagttccccgcctgggagaccctgccgcacgag
cggctgtccccgcgctcggacaccgtcggccggcgcctggcggtgctgcgccggatcgtc
caccccagcgccgacgacccggcggcgggtccggtgcgggtggtggtggcgccggtccgc
tcggtgctgcagccgcaggtgaaggggctggccgagctggagccggtggccgtgcagcgc
ggtgagcagcacgatctggaggaggtggcccgccggctcgcggccgccgcctactcccgg
gtcgaactggtcgagaagcgcggcgagttcgcggtgcgcggcggcatcctggacgtcttc
ccgccgaccgaggagcacccgctgcgggtggagttctggggcgacgacgtcgaggagatc
cggtacttcaaggtcgccgaccagcgctcgctggagatcgccgagcacggcctgtgggcg
ccgccctgccgtgagctgctgctgaccgacgaggtccgggcgcgggccgccgagctggcc
gccgagcaccccgggctggccgagatcctggacaggatcgcccagggcatcgcggtggag
ggcatggagtcgctggccccggtgctggtggacgacatggaactgctggtcgacgtcctg
cccgagggttccatcgcggtggtctgcgacccggagcgggtccggacccgggcggccgac
ctggtggcgaccagccaggagttcctgcaggcctcctgggtggcggcggccgccggcgcg
gaccgcccgatcgacctggaggcgatcgacgtctccgccgcctcgctctggtcgctcgcc
gacctccgcgagcacgccgcggagatcgggctgccctggtggtccgtcagcccgttcgcc
accagcgactccagcgtgagcgagatcctcgaattcgacgcggacaccctcaccctgggc
atgcgcgcggtggaggcgtaccgcggcgacaccgcccgggcgatcgccgacgccaaggag
cggctggccgcggactggcgggtcgtcatggtgacggagggccacgggccggccgcccgg
ctggcggaggtgctcggcaacgagggcatcccggcccgcctggtcgccgacctcgccgag
gcccccacccgggacgtggtcttcgtctcctgcggctccatcgagcacggcttcgtggac
gaggcgctcaagctcaccgtggtcaccgagaccgacctgtccggccagaagtcctccacc
aaggacatgcgccggatgccctcccgccgccgcaacgccatcgacccgctcgccctggcg
gccggcgactacgtggtgcacgagcagcacggcgtcggccggtacgtggagatggtgcag
cgcaccgtccagggcgccacccgcgagtacctggtgctggagtacgcccccgccaagcgg
ggccaccccggcgaccggctcttcgtcccctccgaccagctcgaccaggtgaccaagtac
gtcggcggcgaggccccgaccctgcaccggctgggcggcgcggactgggcgaagaccaag
cagcgggccaagaaggcggtcaaggagatcgccgccgacctgatcaagctgtactcggcc
cggatggccgcccccggccactccttcggcccggacaccccctggcagcgcgagctggag
gacgccttcccgtacgcggagacgcccgaccagctgaccaccatcggcgaggtcaaggcg
gacatggagaagtccgtcccgatggaccggctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtgcgggcggcgttcaaggcggtgcaggacggcaagcaggtggccgtg
ctggtgcccaccacgctgctggtgcagcagcacttctccaccttcgcggagcggtacgcc
aacttcccggtcaccgtgaaggcgctgtcccggttccagaccgactccgaggcgaaggcc
gtcctggagggcctgttcgaggggtcggtggacgtggtcatcggcacccaccggctgttc
tcctcggagacccggttcaaggacctcggcctggtgatcgtcgacgaggagcagcggttc
ggcgtcgagcacaaggaacagctgaagaagctgcgggccaacgtcgacgtgctgaccatg
tcggcgaccccgatcccgcgcaccctggagatggccgtcaccggcatccgtgagatgtcc
accatcaccaccccgccggaggagcggcacccggtgctcaccttcgtcggcccgtacgac
gagaagcagatcgccgccgcggtccggcgtgaactcctgcgcgagggccaggtgttctac
atccacaaccgggtggagtcgatcgacaaggcggccgcccggctgaaggacctcgttccc
gaggcgcgggtcgccaccgcgcacgggcagatgggggagacccagctggagaaggtcgtc
gtcgacttctgggagaaggagttcgacgtcctggtctccaccacgatcgtggagtccggc
atcgacatctccaacgccaacaccctgatcgtcgagcgcggcgacaccttcggcctctcc
cagctgcaccagctgcgcggccgggtcggccgaggccgcgagcgcggctacgcgtacatg
ctgtacccgccggagaagccgctcaccgagaccgcccacgagcggctggccaccatcgcc
cagcacaccgagatgggcgccggcatgtacgtggccatgaaggacctggagatccgcggt
gccggcaacctgctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctc
tacatgcggatggtcggcgaggccgtcgccgagttccgcgagtcgctggagaccggcggc
gagccggaggaggagccgctggaggtgaagatcgagctgccggtggacgcccacgtcccg
cacgactacgcgccgggcgagcggctgcggctgcaggcgtaccgctcgatcgccgcggtc
aactccgaggaggacatcgtccacgtccgcgaggagctcaccgaccggtacggcaagctg
cccgagccggtggagaacctgctcatggtcgcgggcctgcggctgtacgcgcggcgctgc
gggatcggggacatcaccctgcagggcaacttcgtccggttcgggccggtggagctgcgc
gagtcgcaggagctgcggctgaaccggctctacccgcgcacccaggtgaaggccgccgcc
cagcagctgctggtgccccggccgagcaccggcgggcggatcggcggcaagccgctgctg
gggcgggagttgctggggtggtgcacggagttcctcaccacgatgttcgacgacctggcg
ggcgcgaggcggtaa
DBGET
integrated database retrieval system
