Kosakonia cowanii: BWI95_03335
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Entry
BWI95_03335 CDS
T04691
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kco
Kosakonia cowanii
Pathway
kco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BWI95_03335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kco03019
]
BWI95_03335
03016 Transfer RNA biogenesis [BR:
kco03016
]
BWI95_03335
Enzymes [BR:
kco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BWI95_03335
Messenger RNA biogenesis [BR:
kco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BWI95_03335
Transfer RNA biogenesis [BR:
kco03016
]
Prokaryotic type
tRNA degradation factors
BWI95_03335
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
APZ04167
UniProt:
A0A807LAA7
LinkDB
All DBs
Position
complement(715300..717735)
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AA seq
811 aa
AA seq
DB search
MSQDPFLERETEKYSNPIPSREFILDHLSKREKPASRDELAVELNVEGEEQHEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGIVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTGQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYQWPPE
VEKQIADLKEQVPEEAKVGRVDLRNLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRHGTPLDNEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDGELREQYAPLVKHIEELHTLYKTLEQA
RAERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAEEP
ALFRIHDKPTNDAITSFRTVLAELGLELPGGNKPEPRDYAALLESIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGEKGNSTATG
GWHYSMEEILQLGQHCSMAERRADEATRDVADWLKCDFMQDQVGNTFSGVIASVTGFGFF
VRLVDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERAPRNPGKTDRERNKKGTAGRSNASKKPPRRQANKKVNFEPDSEFRGDKAKG
KAKKAKKPSEKTQKIAAATKAKRASRKKKAD
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttcctcgaacgcgaaactgaaaaatactctaatcctattcccagc
cgcgaatttatcctcgaccatctctccaaacgcgaaaagcctgccagccgcgatgaactg
gctgttgagcttaatgtcgaaggcgaagaacaacatgaagccctgcgccgacgtctgcgc
gccatggagcgcgacgggcagctggtcttcacccgccgccagtgctacgccttacccgaa
cgtctcgacctgctgaaaggcattgttattggccaccgcgatggctacggttttctgcgt
gtcgaaggccgcaaagacgatctctatctctccagcgagcagatgaaaacctgcatccac
ggcgaccaggtgctggcacagccgctgggcgcggaccgcaaagggcgtcgcgaagcgcgc
attgtccgcgtactggtgccgaaaaccgggcagattgtcggccgctacttcaccgacgct
ggcgtcggctttgtagtgccggacgacagccgcctgagcttcgatatccttatcccgcct
gaagagattatgggcgcgcgcatgggctttgtagtagtggtcgaactgacccagcgcccg
actcgccgcaccaaagcagtgggtaaaatcgttgaagtgctgggcgacaacatgggcacc
ggcatggccgtcgatatggcgctgcgcacccatgaaattccctaccagtggccgccggaa
gtcgaaaagcagattgctgacctgaaagagcaggtgccggaagaggccaaagtgggccgc
gtcgatctgcgtaatctgccgctggtcactattgatggcgaagatgcccgcgactttgat
gacgccgtttactgtgagaagaaacgcggcggcggctggcgcttatgggttgccatcgcc
gatgtcagctactacgtgcgccacggtacgccgctggacaacgaagcgcgtaatcgcggc
acctccgtctacttcccgtcgcaggttgttccaatgctgccagaagtgctctccaacggc
ctctgttccctgaacccgcaggtagaccgcctctgtatggtgtgtgagatgaccatctcc
gccaaagggcgtctgaccggatataagttctacgaagcggtgatgagctcccacgcgcgt
ctgacctacaccaaggtgtggcatatgctgcagggcgatggcgaactgcgcgaacaatac
gcgccgctggtaaaacacattgaagagctgcataccctctataaaacccttgagcaggcg
cgcgcagagcgcggcggcatctcctttgagagcgaagaggcgaagttcattttcaacgcc
gaacgccgaattgagcgcattgagcagacgcagcgtaacgacgcgcacaagctgattgaa
gagtgcatgatcctcgccaatatctctgcggcacgcttcgttgagaaggcagaagagcct
gcactgttccgtattcacgataaaccgaccaacgacgctattacctcgttccgtaccgtg
ctcgccgagctgggcctggagctgccgggcggcaacaagccggagccgcgcgattatgcc
gcgctgctggaatcgatcgccgatcgtcccgatcacgagatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatctacgatccggaaaaccgcggccactttggcctggcgctg
caatcctatgcgcactttacctcgccgattcgccgttacccggatctttcgttgcaccgt
gcgatcaagtacctgctggcgaaagagcagggcgagaagggtaacagcaccgcaacgggc
ggatggcactacagcatggaagagatcctccagctgggtcagcactgttcgatggccgag
cgccgcgccgatgaagcgacccgtgatgttgcggactggctgaagtgcgactttatgcag
gatcaggtgggtaacaccttctccggcgtcatcgccagcgtcaccggtttcggcttcttt
gtgcgtcttgttgacctgtttatcgatggtctggtgcacgtatcgtcgctggataacgac
tactaccgctttgaccaggttggtcagcgcctgattggcgaatccggcggtcagacctat
cgcctgggcgaccgggttgaagtgaaggttgaagcggtcaatatggatgagcgtaagatc
gacttctcgcttatctccagcgagcgcgccccgcgtaacccgggtaaaaccgatcgcgag
cgtaacaagaaaggcaccgcaggtcgcagcaacgcgagcaaaaaaccgccgcgtcgccag
gccaataaaaaggtgaatttcgaaccggatagcgaattccgtggcgataaagccaagggc
aaagcaaaaaaagcgaaaaagccctctgagaaaacgcaaaaaatagccgccgcgaccaaa
gcaaaacgcgcgtcgcgcaagaaaaaagccgattga
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