Candidatus Korarchaeum cryptofilum: Kcr_0682
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Entry
Kcr_0682 CDS
T00668
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kcr
Candidatus Korarchaeum cryptofilum
Pathway
kcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kcr_0682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kcr03019
]
Kcr_0682
03400 DNA repair and recombination proteins [BR:
kcr03400
]
Kcr_0682
Enzymes [BR:
kcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Kcr_0682
Messenger RNA biogenesis [BR:
kcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Kcr_0682
DNA repair and recombination proteins [BR:
kcr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Kcr_0682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RNase_T
Cas3-like_C_2
STAS
Radical_SAM
Motif
Other DBs
NCBI-ProteinID:
ACB07434
UniProt:
B1L4Q5
LinkDB
All DBs
Position
complement(694114..698262)
Genome browser
AA seq
1382 aa
AA seq
DB search
MEGMGLPKGAIIENSILSPSILGIIALLILISILYYRKRINDELEDAIRHKDVGRVFKLL
SGSRLSILLMDRGLISAGIDLLFFRGEFNKFLAIIGRLRIADDRVYFLRESDILGLDIET
EIEYDKKPREIGLIALRSSDWKELARLNIKPEEISETYGSIPQAFLSKLIRRFRVLVGHN
IYSFDIDVLRSWGVHFGDVRFIDTYALALISVPEALSHSLEGLSFLFKVDYTPHRADEDA
HASLTILPKLIHVAKRKGILPEIKAVPFEPLSGLREVRIPEVATDFRQLRVRGSKRGEVV
VTIDASSFSDAWYPKSLDPSSDLGDLTPLQRLALTIAKSFAAAGGDPERLRALEMPYEDL
KKALASVVERITRDNQLRDPSEGFVVEYRYLKDLLGRMRGRAESKIVLRGAYLLRAYYQD
YSSLLKQLSATFSKVELETPFDLAVDVEYRRPEVKRTLYLVKDGIDKSSRHSNLFGGLLA
AVIQRGRSLVLVSNSAEEIVSREVSYRMRARAEVHRSGDLIRTLERVNKFASMGYNIVLY
STRTLVRSGEEVMLKSLVEVLRLSGGTCIIVNADRELIRRLNLSDFVEEVEVRPLAPPIS
MSYATFPSLKEAIKELEEIVRDVWGFSLRPYQRRLVARLLMPYTYQGLLLDRPFSIAILP
TGSGKSLIFQSVALFLRRKIGGTTVVISPLLALIEDHLNSLLSRGVRACAITSMARDRLD
EYIRGLARGGYDIVYITPEQLEKEEVRRSLERADINYLVIDEIHTLYKWGRTFRPSYEYL
AQYIKRSREYGLWLPLAGFTATLPGKGLEEVIKVLTGDEKFNMEEIDFNTDFDPSKPDTE
QVKVFKGPAIRDNIIIDVVEAPSGQERLYKLLNVVSELSRWADSFSGSSPWLGIIYTGFV
RSTKEHENAPYIADFLSENLGRNVIYFHGQMSDSEKKDVLNRIYRVSRGEAKEPRIVVAT
KAFGLGVDIPNVRWVVHYMMPESIEDYYQEIGRGGRDGKICRAVMLYSPGYDYERRLALI
KRTLLDPMLVTKIYSAISRADEGASVPMILLAPLLLWKYDESDLMDSLRSQGRLPEFLEN
AIERALNTLSNLNILNYDIVREKFVLVDRRSFKGPLYPINGKGLTGDAQAVGRGDLYLSE
SGDIIVSEHRKQNWIPVTNVPTQAIKVSSIKRVPIEEVAAFISDDQFHTLFSLYLMNEFS
SLLLKASREERDSIAKRRIEEYLSSSIEELYRGMVRGLREQVIEDHREFLKYYNPLMRNG
YIHYRAAYINKEYLCELLSFVALLYMVENGVPGMKLAFLVPHGYRKMILSKLEEKMKNYG
LPLMEPVVLNIKREEVRHLDGEAMREKLAGAEAIFFLATHPTLHRVANMLRGKVFRIYVM
KR
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
ttggaggggatggggctcccgaagggtgctattattgagaatagcatcctaagcccctca
atactgggcataattgctctgctcatcctaatatcgatcctctactacaggaagaggatc
aatgacgagctggaggatgcaattcggcataaagacgtaggtagagtcttcaagttgcta
tcgggctcaaggctgagtatcctactcatggacaggggattaatatcggcaggcatagat
ctactattcttcaggggggagttcaacaaattcctcgctatcatagggcgtttgaggata
gctgacgacagggtatacttcctccgtgagagcgatatcctggggctggatatagagacc
gagatagagtacgataagaagccgagggaaataggtctaatagcattgaggagcagcgat
tggaaggagctggctagactcaacataaagcctgaggaaatctccgagacttacggttcc
atcccccaggctttcctctcgaaattgatcaggaggttcagggtcttggtgggccataac
atctactccttcgatatcgacgtcctgagatcctggggagtccatttcggggatgtgagg
ttcatagatacctacgcattagcactgatctcggtacccgaggccctcagccactcactc
gagggcctctccttcctgttcaaagtggattacacgccccacagagcggatgaagatgct
cacgcatccctcacgatactcccgaagctcatccatgtagcgaagaggaagggcatactc
ccggagataaaagctgtgccttttgaaccgctctccggtctgagggaagtgagaataccg
gaagttgcgacggattttcgccagctcagggtgagggggtctaagagaggggaggtagtg
gtcacgatagatgcttcgagcttctccgatgcctggtatccgaagagcttggatccatcc
tccgatttaggggacctcactcccctccagaggctcgccttaactatcgcgaagtcattc
gccgcagccggaggggatcctgagaggcttagagcacttgagatgccttatgaggatctg
aagaaggccctggcatcggtagtggagaggataacgagggacaatcaactgagggaccca
tccgagggattcgtggtcgagtacaggtacctgaaggatctcctagggaggatgaggggg
agggcggagtccaagatagtcctcagaggggcttacctcctgagggcctattatcaggat
tactcgagcctgctgaagcagttatctgctaccttcagcaaggtggagctggagacaccc
ttcgatctcgctgtcgatgtggaatacaggaggcccgaggtgaagaggactctctatctg
gtaaaggatgggatcgataagagctcccgtcactccaacctcttcggagggttgcttgct
gcggtcattcagagggggaggagcctcgtgctcgtgtccaactccgctgaagagatcgtc
tctagggaagtatcttaccgcatgagggctagggcggaggtgcatcgctcgggggatctc
atcaggaccctcgagagggtgaacaaattcgcttccatgggctacaatatagtgctctat
tcgaccaggaccctcgtcagatcgggagaggaggtgatgctgaagtccctagtggaggtc
ctgcgtctatctggagggacttgcatcatagtgaacgcggatagggagttgatcaggcgg
ctcaacttgagcgatttcgtggaggaagtggaggtcaggcctctggcgccacccattagt
atgtcctacgcaaccttcccctccctgaaggaagccataaaagagctagaggagattgtt
agggatgtctggggcttctcattaaggccatatcagaggagactggtggcccggttgctg
atgccctatacatatcagggactcctgctagacagacctttctcgatagctatactgccc
acgggctccgggaaatccctcatattccaatcggtcgccctcttcctgaggaggaaaatt
ggagggactaccgtcgttatctccccattgctggcccttatagaggatcacctcaacagc
ctgctgtccagaggggtgagggcctgcgctatcacgagtatggcgcgcgacaggctggat
gagtacataagggggctggctagagggggatacgatatagtttacatcacccccgagcag
ctggagaaggaggaagtcaggaggagcctcgagagggccgacataaattacctggtgata
gatgagatccacacgctttacaaatggggcaggactttcaggccgagctacgagtatcta
gctcagtacatcaagaggagcagggaatatggcctctggttgcctctagctggcttcacc
gcgactctgccgggaaagggattggaggaggtgatcaaggtcctgacaggggatgagaag
ttcaatatggaggaaatagatttcaacacagacttcgatccatcaaagccagatacagag
caggtaaaggttttcaaggggcctgcgataagggataatataataatagatgttgtggag
gcacccagcggtcaagaaagattatataagctgcttaatgtggtaagtgagctatccagg
tgggccgatagtttctcaggaagctctccctggctcggcataatatacactggattcgtg
aggtccactaaggagcatgagaacgccccatatatagctgatttcctctccgagaatctc
gggagaaacgtcatctattttcacggccagatgagcgattcggagaagaaagatgtcctt
aacaggatttacagagtcagcagaggggaagctaaggagccaaggatagtggtggccact
aaggccttcggtctgggggtggatatccccaacgtgaggtgggtcgtccactacatgatg
ccagagagcatagaagattactatcaggagatagggaggggaggcagggacggtaaaatc
tgcagagctgtcatgctctactccccgggatacgattatgagcgcaggctggcactaata
aagaggacgttgctggatccaatgctcgtaactaaaatttattctgctatatcgcgtgcg
gatgagggggcatctgttccgatgattctcctagctcctctcctcctgtggaagtacgat
gagagcgatttaatggattctctgaggtctcagggccgcctgcccgaattcctcgagaac
gctattgagagggctttgaacacactatccaatctaaatattctcaattacgatatagta
cgcgagaaattcgtgctggttgacaggagatcgttcaaaggacccctatatcccataaat
ggtaagggcctgacgggcgacgctcaggccgtcggccggggcgatctgtatctcagcgag
agtggagatataatagtgagtgaacaccggaagcagaactggatccctgtgacgaacgtc
cccacgcaggcaataaaggtgagctcgataaagagggttccaattgaggaagtagctgct
ttcatctccgatgaccaattccacactctcttctccctctacctaatgaacgagttctcc
tcactcctgctgaaagcatctagggaggagagggactctatcgcgaagagaaggatagag
gagtacctctcaagttcaatagaggagctttacaggggcatggtccgggggttgagggag
caggtaatcgaggatcacagggaattcttgaagtactacaaccccctaatgaggaacggt
tatatacactatagggccgcatatataaataaggaatatctttgcgagctcctatccttt
gtagcattactctatatggtggaaaacggggtcccagggatgaagctggctttcttagtg
ccccacggttacaggaagatgatcctgagcaagttggaagagaagatgaagaattacggt
ctccccctgatggagccagtggtcttgaatataaagagggaggaagttaggcatttagat
ggggaagcgatgagggaaaagttggccggagcagaggcaatattctttctcgccactcat
ccaacacttcatagagtcgctaacatgctgagggggaaggtattcagaatctatgtcatg
aagaggtga
DBGET
integrated database retrieval system
