Candidatus Kinetoplastidibacterium crithidiae TCC036E: CDEE_0195
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Entry
CDEE_0195 CDS
T02464
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
kct
Candidatus Kinetoplastidibacterium crithidiae TCC036E
Pathway
kct03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kct00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDEE_0195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kct03021
]
CDEE_0195
03400 DNA repair and recombination proteins [BR:
kct03400
]
CDEE_0195
Enzymes [BR:
kct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDEE_0195
Transcription machinery [BR:
kct03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CDEE_0195
DNA repair and recombination proteins [BR:
kct03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CDEE_0195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AGF48017
UniProt:
M1LQZ3
LinkDB
All DBs
Position
complement(801435..805616)
Genome browser
AA seq
1393 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKVSVASPEKIRSWSYGEVRKPETINYRTFKPERDGLFCSR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTSAKVRRERMGHVELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIDPGMTPLKRGQIMSDDDFYAKNEEYGDEFKALM
GAEAIRELLHNIDLEQEIHVLRDELKVSSSESKIKKISKRLKVLEGFQRSNLKPEWMILE
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELKAPEIILRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGIPKLMALELFKPFVFNKLESMGFASTIKAAKKMVESQDPVVWDLLEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIGGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLSSNNILFPANGEPSIVPSQDIVLGLYYATRERINGKGEGMFFSSVSEVQRAYDIG
EVELQSRVTVRITEYERDNDNTWMPVYKRYETTVGRSILSEILPKGLSFSVLNKTLKKKE
ISRLINNSFRRCGLHDTVIFVDNLMQSGFLLATKAGISIAMEDMLIPAAKSNILSDANKE
VKEIDKQYSSGLVTSQERYNNVVDIWGKASDRVGKAMMEFLATEPVSNRHGEEVRQESFN
SIYMMADSGARGSVAQIRQLAGMRGLMAKPDGSIIETPISANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEYDCGTSHGYNMKAIMEGGEVIEPLRDRVL
GRVIINDIVDPDTRETVIHSGSLLDEDLVEKIDLIGVDEVKVRTPLTCESRRGLCVCCYG
RDLGRGEAVNIGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRSVMASVVETKSKGTVGF
MSTMRYVTNPKGERVVISRSGELAVFDDNSRERERHKIPYGAILLVGDGDAVNAGVLLAS
WDPLTRPIVSEYAGRVSFENIEEGVTVAKQVDDVTGLSTLVVITPKIRGNKIAMRPQIRL
VNESGEGVKIAGTDVVSSITFPVGALITVRDGQQVLVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPRGAGMLAELTGTVSFGKDTKGKQRLVITDLDGVSNEFLVAKEKQILVHDG
QVVNKGETIVDGPADPHDILRLQGIESLAAYIINEVQDVYRLQGVKINDKHIEVIVRQML
RRVNVINPGDTSFVPGEQVERADLLNDNDRVTSQNGIPATYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLSYHKARKAKIAAMEAEKL
NISESRPSIFENS
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgctacttgacctttttaaacaggtttcacaagatgagcagtttgatgctatt
aaagttagtgtcgcttctccagagaaaattcgttcgtggtcttatggtgaagtacgtaaa
ccagaaactattaactatagaacttttaagcctgaaagagatggcttgttttgttctaga
atatttggtccaattaaggattatgagtgtttatgtggtaaatataaacgtcttaaacat
cgtggcgttatttgtgaaaaatgtggtgttgaggtaacttctgcaaaagtcagaagagaa
aggatggggcatgttgaacttgctagtcctgttgctcatatatggttcttaaaaagtttg
ccttctaggttagggatggttttagatatgaccttgagagatatagaaagagttctatat
ttcgaagcttggtgtgtcatagatcctggaatgacacctttgaaacgtggtcagattatg
tctgacgatgatttttatgcaaagaatgaagagtatggagatgagtttaaggctcttatg
ggtgctgaagctataagagagttattgcataatatagaccttgaacaagaaattcatgtt
ttgagagatgagttaaaagtttcttcttcagagtcaaaaatcaaaaaaatctcaaaacgt
ttaaaagttcttgaaggctttcaaaggtctaacttgaagcctgaatggatgattttagaa
gttcttccggtattgcctcctgatttaaggcctcttgttccattggatggtggcaggttt
gcaacttctgatctaaatgacttatatcgtagagttatcaatcgtaacaataggttgaaa
agactcatagaattaaaagctcctgagattattctaagaaatgaaaaaaggatgcttcaa
gagtctgtggattccttgttggataatggtcgaagaggtaaggctatgactggtgctaat
aagcgtcagttaaaatctttagctgatatgattaaaggcaagggtggtagattccgtcaa
aatcttttgggtaaacgtgtagattattctggtagatcggtaattgttgtaggacctcaa
ttaaaattacatcagtgtggtataccaaagctaatggcattagaattatttaagccattt
gtttttaataagttagaatccatgggttttgctagcactattaaggcagcaaaaaagatg
gttgagagtcaagatccagttgtatgggatttattggaagaggtgataagagagcatcca
gttatgctgaatagagctcctactttgcatcgtttgggtattcaagcttttgagccagta
ttaattggtggtaaggccatacagttacatcctcttgtttgtgctgcttttaatgctgac
tttgatggagatcaaatggctgtccatgtacctctatcattggaggctcagttagaagca
agaacattgatgttgtcttcgaataatattttattccctgcaaatggtgagccatcaata
gtcccatcgcaagatatagtgttaggattatattacgctactagagaacgtattaatggt
aagggagaaggcatgtttttctcttctgtttctgaagttcaaagggcttatgatatagga
gaagtagaattacaaagtcgtgtgactgttcgtattactgagtatgaacgcgataatgat
aatacatggatgccagtttataaacgttatgaaactacagttggtaggtctatattgtct
gaaatcttgcctaaaggtctatctttctctgttttgaataaaactttaaagaaaaaagaa
atctctagactaattaataattcttttagacgttgtggtttgcatgatactgttatcttt
gttgataatttgatgcaatcaggttttcttcttgctactaaagccggtatttctattgct
atggaagatatgttgattcctgcagcaaagtcaaatattttgtcagatgctaataaggaa
gttaaagaaatagataaacaatactcttctggattggtgacttctcaagaaagatacaat
aatgttgtagatatttggggtaaagcaagtgatagagttggcaaagcaatgatggaattt
ttagctactgagcctgtttcaaacaggcatggtgaggaagttcgtcaggaatcttttaat
tctatttatatgatggcagattcgggtgctcgtggttctgtagcccaaattagacagttg
gccggtatgcgtggcttaatggcaaaacctgatggttctattattgaaactccaattagt
gcaaattttagagaaggtttgaacgttctgcaatattttatttctactcatggtgctcgt
aagggtctagctgatactgcccttaaaacagcaaattctggatatttaaccagaagatta
gtagatgtaacacaagatctagttattacagaatatgattgcggcacatctcatggttac
aacatgaaggctatcatggaaggaggggaagttatagaacctctaagagatagagtgctg
ggtcgtgtaattattaatgatatagtagatcctgatactagagaaacagttatacattct
ggttctttattagatgaggatctagtagaaaaaatagatttaataggtgttgatgaagta
aaagttcgtacccctcttacatgtgaaagtagaagaggtttatgtgtttgttgttatggt
agggatttaggtagaggagaggctgttaatataggtgaagctgttggtgttgttgcagcg
cagtctataggtgaacctggtactcagcttactatgagaactttccatataggaggtgcg
gcatcacgttctgttatggccagtgtagttgaaacaaaatctaaaggtactgttggtttc
atgagtactatgagatatgttacgaatcccaagggagagagagtagttatttcaaggtcg
ggagagctagctgttttcgatgataattcgagagagcgtgaaagacataagataccttat
ggtgctattttgttggttggtgatggagatgctgtaaatgctggtgttcttcttgcttct
tgggatccattgactagacctattgtatctgagtatgcaggtagagtaagttttgaaaat
attgaggaaggggttactgttgccaaacaggttgatgatgttactggattgtccacattg
gtcgttattacacctaaaataaggggtaataaaatagctatgaggccacaaattagatta
gttaatgaatctggtgaaggtgttaagatagcaggtactgatgttgttagcagtattact
tttccagtaggggctttgattacagttcgtgatggtcaacaagttttggttggtgaggtt
ttagcaagaattcctcaggaatctcaaaaaactcgtgatattacaggtggtcttcctagg
gttgctgaattatttgaagctcgttctccaaggggtgctggcatgttggctgaattgaca
ggtactgtttcttttggaaaggatactaagggtaaacaaagattagttattactgatcta
gatggagttagcaacgaattccttgttgcaaaagagaaacaaattttagtacatgatggc
caggttgttaataaaggagaaactatagtagatgggccagcggatcctcatgatatattg
cgtttgcaaggaatcgaaagtttagctgcttatataattaatgaagttcaggatgtttat
cgtttgcaaggggttaaaatcaatgataagcatattgaagttatagttcgtcagatgttg
cgtagagttaatgttattaaccctggtgatacaagttttgtgcctggtgagcaagtagaa
agagcagacttattaaatgacaatgatcgtgtaacatcacagaatggaataccagcaact
tatgaaaatgtcttgcttggtattactaaagcttcgctttcgacagattcttttatatct
gcagcttctttccaagaaacaactcgtgttttaactgaggcagctataatgggtaaaaaa
gatgatctgcgtggtttgaaggaaaatgtgatagttggtcgtttaattccagctggtact
ggtttgtcatatcataaagctcgtaaagctaaaattgctgctatggaagctgagaagtta
aatatatcagaaagtagacctagtatttttgaaaactcataa
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