Candidatus Kinetoplastidibacterium crithidiae TCC036E: CDEE_0845
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Entry
CDEE_0845 CDS
T02464
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kct
Candidatus Kinetoplastidibacterium crithidiae TCC036E
Pathway
kct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDEE_0845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kct03019
]
CDEE_0845
Enzymes [BR:
kct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDEE_0845
Messenger RNA biogenesis [BR:
kct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDEE_0845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
SNF2-rel_dom
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AGF47816
UniProt:
M1LUP1
LinkDB
All DBs
Position
complement(594308..595678)
Genome browser
AA seq
456 aa
AA seq
DB search
MKEKRENKNKQILFDSFGLDQLLLNSINSIGYDTPTAIQEKAIPFILNGRDVLGAAQTGT
GKTAAFVLPIINKILPYANSSTSPARHLLRVLILVPTRELANQVYDSVVIYSKNTNLRSV
VLFGGADHYNQENNLKLGCEILVATPGRLIAHIEQGNLHLQNIEIFVLDEADRMLDMGFM
PDIDKIISKLPKNRQTLFFSATFSKFMRKIGMSYLKDPVELDITSPNSIADNVEQLSYIV
PNRFKMEAVVSILTARVLETIIIFTNTKLSTIKLTSFLRSSNIQCDSIHGDKSQLERTAV
LESFKNGILRVLVATDVAARGLDVLGISCVINFDIPHSPEDYVHRIGRTGRANNTGVAIS
LISNDEEDVLLSSIEKFTDSTILRLPLNQMKLTSNDSRLLGSGVDEQLNKKAVLLGSSAI
ASSNKEDHFNKIKINNSIKMTKENYAILLGGTGKKN
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaaagagaaaataaaaataagcagattttatttgatagttttggtttagat
caacttttactaaacagcataaactccataggttatgacactccaacagcaatacaagaa
aaggctatacctttcatattgaatggaagagatgttctaggtgcagcacagactggaaca
ggaaaaacagcagcttttgttttaccaattattaacaaaatattaccatatgctaattct
agcacctctccagctcgtcatttattacgtgtcttaatattagttccaacgcgtgagctt
gcaaatcaggtttatgacagtgttgttatttatagtaaaaatactaatttgcgatctgtt
gttttgtttggaggagcagatcactataatcaagaaaataacttaaagttaggatgtgag
attcttgtagcaacgccaggaaggttgatagctcatatcgagcaaggtaatttgcattta
caaaatatagaaatttttgttcttgatgaagctgatagaatgttagatatggggtttatg
ccagatatagataaaatcataagtaaattacctaaaaatagacaaactcttttcttttca
gctacatttagtaagtttatgcgtaaaataggcatgtcttatttaaaagatccagttgaa
ttagatattactagtcctaattctatagctgataatgtagagcaattatcatatattgta
cctaatagatttaagatggaagcagttgtatctatccttacagctagagttctagaaaca
ataataatttttactaatactaaattatctaccataaaacttacatcttttttgcgatcg
agtaatattcagtgtgactctattcatggcgataagagtcaattagaaagaacagccgta
ctagaaagttttaaaaatggtattttgcgtgtgcttgttgctacagatgtagcagctaga
ggacttgatgtactaggtatttcatgtgttataaactttgatattccacatagtcctgaa
gattatgtacatagaataggaagaacgggtagagcaaacaatactggagttgccatttcc
ttaatatctaatgatgaagaagatgttttgttatcaagtattgaaaaatttacagatagt
acaatattacggttgcctttaaatcagatgaagttaacctctaatgattctagattatta
ggatctggtgttgatgaacaacttaataaaaaagcggttcttttaggctcgagcgcaatt
gcttcttctaacaaagaagatcattttaataaaattaaaatcaataacagtattaaaatg
actaaagagaattacgctatattgctgggtggtactgggaaaaaaaattga
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