Kluyvera cryocrescens: RIN60_13775
Help
Entry
RIN60_13775 CDS
T09399
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kcy
Kluyvera cryocrescens
Pathway
kcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RIN60_13775 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kcy03019
]
RIN60_13775 (rne)
03009 Ribosome biogenesis [BR:
kcy03009
]
RIN60_13775 (rne)
Enzymes [BR:
kcy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RIN60_13775 (rne)
Messenger RNA biogenesis [BR:
kcy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RIN60_13775 (rne)
Ribosome biogenesis [BR:
kcy03009
]
Prokaryotic type
rRNA processing factors
RIN60_13775 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
WNN70158
LinkDB
All DBs
Position
2877038..2880289
Genome browser
AA seq
1083 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRMKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHISALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVTAIESRQTDVRCIIVPNDQME
TPHYSVLRVRKGEETTTLSYLLPKLHEEEMALPVDEEIAERKMPEQPALATFVMPEVPPA
PTAEKTAVAAPKAKAAVAAAPAAPGLISRFFAALKNLFAGAPEKTVEAQPEKQQEAKPER
QQERRKPRQNNRRDRNDRNDRRNDRGDRNERSDRNENAEGREPRENREGREDNRRNRREK
PQQSTEARENRQQSAAVVEDGDKSKSRDEQQPRRERNRRRNDDKRQAQQEAKPQNREEAV
VAQEAAPEDRVQNMPRRKPRQLSQKVRIETAEQTAAREFAPEEPQQEAPRTALAKVDLPA
VVDAPAQAEQDENGEARDNNGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVAC
ASPEMASGKVWIRYPVAPVQDQAVVDAPVEQEVIEQPAAVETVEQTVAPVAAAEPAIVEA
PVQPAETAAPEVVAEPVAAVAEEAAPVQEEAPAPVVAEEAPVVVEATEQPVAESVEAKAE
IEEVAAPVVVEPVVETAPVVEAPAEVEAPVAPAPAAAEPAVKETVIEAPAVATKPAAVAP
SIVAASHATAPMTRAPAPDYVPEAPRHSDWVRPSFGFEGKGSAGGHSATHTATAEPTRPQ
SAE
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgtgtcgccctcgttgat
gggcagcgtctgtacgatctggatattgaaagcccaggacacgaacagaaaaaagcgaac
atctacaaaggcaaaattacccgtattgaacccagtctcgaagccgcatttgttgattac
ggcgccgagcgtcatggtttcctccccctcaaagaaatcgctcgcgaatacttccctgct
aattacaacgcgcatggccgtccgaacatcaaagacgtgctgcgtgaaggtcaggaagtt
atcgttcagattgataaagaagaacgcggcaataaaggcgctgcgctgactacctttatc
agcctggcgggcagctatctggtgctgatgccaaacaacccacgtgctggcggtatctct
cgtcgcatcgaaggtgatgaccgcaccgagctcaaagaagcgctggccagtctcgaactg
ccagacggcatgggtttaattgtacgtaccgcgggcgtcggtaaatccgccgaagcgtta
cagtgggatttaagcttccgcatgaagcactgggaagccatccagaaagcggccgaaagc
cgccctgcgccattcctgattcaccaggaaagtaacgttatcgttcgcgctttccgcgac
tatctgcgccaggacattggcgaaatcctgatcgacaacccgaaagtgatggaaatggcg
cgtcagcacatttctgcgctcggtcgtccggatttcagcagcaaaattaaactgtacact
ggtgaaattccactgttcagccactaccagattgaatcgcagatcgaatccgccttccag
cgtgaagtccgtctgccatccggtggctctatcgttatcgatagcaccgaagcgttgacc
gctatcgatatcaactccgcacgcgcaactcgcggcggcgacatcgaagaaacggcattc
aacactaaccttgaagcggccgatgaaatcgcccgccagctgcgtctgcgtgacctcggc
ggcctgatcgttatcgacttcatcgacatgacaccggtacgccaccagcgcgcggtagaa
aaccgtctgcgtgaagcggtgcgccaggaccgtgcacgtattcagattagccatatctcc
cgatttggcctgctggagatgtcacgtcagcgtctgagcccatcactgggcgaatccagc
caccatgtctgcccgcgctgctccggcaccggtaccgtccgtgacaacgaatcgctgtcg
ctctctatcctgcgtctgattgaagaagaagcgctgaaagagaacaccaaagaagttcat
gcgattgtccctgtgccaattgcctcttacctgctgaacgaaaaacgtgccgcagtcacc
gccattgaatcccgtcagaccgacgtgcgctgcatcatcgtgccaaacgatcagatggaa
accccgcactactccgtactgcgcgtgcgcaaaggcgaagagaccacaacgctgagctat
ctgctgccgaagctgcatgaagaagagatggcattgccggttgatgaagagatcgccgag
cgtaaaatgccggaacaacctgcgctggcgaccttcgtcatgccggaagttccacctgca
ccaaccgcagaaaaaaccgcggttgccgcaccaaaagcgaaagccgccgttgctgcagcc
cctgcggctcctggcctaatttcccgcttcttcgctgcgctgaaaaacctgtttgccggt
gcgccggaaaaaaccgttgaagctcagccggaaaaacagcaagaagccaagccggaacgc
cagcaggaacgtcgtaaaccgcgtcaaaacaatcgtcgcgaccgtaatgatcgcaacgac
cgtcgtaacgatcgcggtgaccgtaatgaacgcagcgatcgcaacgaaaatgcggaaggt
cgcgaaccgcgcgagaatcgtgaaggccgcgaggacaaccgtcgtaatcgtcgtgagaaa
ccacagcagtcgaccgaagcgcgtgaaaatcgccagcagtccgctgccgttgtagaagat
ggcgacaaatcgaagtcccgtgacgagcagcagccgcgtcgcgaacgcaaccgccgccgc
aatgacgataaacgtcaggcgcagcaggaagcgaaaccgcagaatcgtgaagaagccgtc
gttgctcaggaagccgcaccggaagatcgcgtacagaatatgccgcgccgtaaaccgcgt
cagctgtcgcagaaagtgcgtatcgaaaccgcagagcagaccgccgcacgtgaatttgcg
ccggaagaaccacagcaggaagcaccgcgtactgcactggcgaaagttgacctgccggcc
gtcgttgatgcaccagcgcaggctgagcaggatgaaaacggtgaagctcgtgataacaac
ggtatgccgcgtcgctcccgtcgctcaccgcgccatctgcgcgtcagcggtcagcgtcgt
cgtcgttaccgcgatgagcgttatccaacacagtccccaatgccgctgaccgtcgcctgt
gcgtcgccagaaatggcttctggtaaagtgtggattcgctacccggttgccccggttcag
gatcaggctgtcgttgatgcgccagttgagcaggaagtaattgagcagccagccgcggtt
gaaaccgtagagcaaactgttgctccggttgctgccgctgagccagcaatcgtagaagca
ccagtgcagccagcggaaaccgctgcgccagaagtggttgccgaacctgttgccgccgtt
gctgaagaagctgcgccagttcaggaagaagcaccggcgccagtcgttgcagaagaagcg
cctgttgtcgttgaagcaactgagcagcctgtcgcggaatctgtcgaagcgaaagccgag
attgaagaagttgcagcgccggtcgtggtcgagccagtcgtagaaactgctccggtggtt
gaagcgcctgctgaagttgaagcccctgtggccccagccccagccgctgcagaacctgcc
gtgaaagaaaccgtgattgaagcccctgctgtggctaccaaaccggccgctgttgcgccg
tctatcgttgccgcgagccatgctacggcaccaatgacccgtgccccagcgccggactac
gtgcctgaagcaccgcgtcacagcgactgggtacgcccatccttcggcttcgaaggtaaa
ggctccgcaggcggtcatagcgcaacgcacacggccactgctgaaccaacgcgtccgcaa
tcggctgaataa
DBGET
integrated database retrieval system
