Kluyvera cryocrescens: RIN60_21450
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Entry
RIN60_21450 CDS
T09399
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
kcy
Kluyvera cryocrescens
Pathway
kcy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kcy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RIN60_21450 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kcy03021
]
RIN60_21450 (rpoB)
03400 DNA repair and recombination proteins [BR:
kcy03400
]
RIN60_21450 (rpoB)
Enzymes [BR:
kcy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RIN60_21450 (rpoB)
Transcription machinery [BR:
kcy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RIN60_21450 (rpoB)
DNA repair and recombination proteins [BR:
kcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RIN60_21450 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
WNN71556
LinkDB
All DBs
Position
complement(4564502..4568530)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGYSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALQYTTEQILDLFFDKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKIYVEKARRITARHIRQLEKDDIKHIEVPVEYIAGKVAAKD
YVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYISETIRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKEDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIYAVLVAGGVEADKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPHDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGTDVRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDGAKESEIKELLQ
LGGLPSSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccgcag
gttctggacataccttatctcctttctatccagcttgactcgttccagaagtttatcgag
caagatcctgaaggtcagtatggtctggaagcagctttccgttccgtattcccgattaaa
agctacagcggttattcggagctgcaatacgtcagctaccgcctgggcgaaccggtgttt
gatgttcaggaatgtcagattcgtggcgtgacttactccgcaccgctgcgcgtaaaattg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtgtacatgggcgaaattccgctcatgaccgacaacggtacctttgttatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagcccaggcgtcttctttgactccgat
aagggtaaaacccactcttcgggtaaagtgctgtataacgcgcgtatcatcccttaccgt
ggttcctggctggacttcgagttcgatccgaaagacaacctgtttgtccgtatcgaccgt
cgtcgtaaactgcctgcaaccatcatcctgcgtgcactgcagtacaccactgagcagatc
cttgacctgttctttgacaaagttgtcttcgaaattcgtgacaacaaactgcagatggaa
ctggtgccagagcgcctgcgtggtgagactgcctccttcgacatcgaagccaatggcaag
atctacgtagaaaaagcgcgtcgtattactgcgcgtcatattcgccaactggaaaaagac
gatatcaagcatatcgaagttccagttgagtacatcgcgggtaaagttgcggcgaaagac
tacgttgacgaatccaccggtgagctgatctgtgcagcgaacatggagctgagcctggat
ctgctggcgaagctgagccagtctggtcacaagcgtatcgagacgctgttcaccaacgat
ctggaccacggcgcatacatttctgagactatccgtgtcgacccaaccaacgaccgcctg
agcgcgctggtagaaatctaccgcatgatgcgccctggtgagccgccgactcgtgaagct
gcagaaagcctgttcgagaacctgttcttctctgaagaccgttatgacctctctgcggtc
ggtcgtatgaagttcaaccgttctctgctgcgcgacgaaatcgaaggttccggtatcctg
agcaaagaagacatcatcgaagtgatgaaaaagctcatcgatatccgtaacggtaaaggc
gaagtcgatgatatcgaccacctcggcaaccgtcgtatccgttccgtaggcgaaatggcg
gaaaaccaattccgcgttggcctggttcgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatttctgca
gcagtgaaagagttctttggctccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctctgccctcggcccaggcggtctgacccgt
gaacgtgcaggctttgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgcctgaaggtccaaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgaatacggcttcctcgagactccgtatcgtaaagtgactgacggtgtggtaacc
gatgagattcattacctgtccgctatcgaagaaggtaactacgtcatcgctcaggcgaac
tccaacctggatgacgaaggccactttgtagaagacctggtaacttgccgtagcaaaggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtatccacccagcaggtg
gtttccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcaaacatgcaacgtcaggccgttccaactctgcgtgctgataagccgctggtt
ggtaccggtatggaacgtgctgtagccgttgactccggtgttaccgctgttgctaagcgt
ggcggtaccgttcagtacgtcgacgcatcccgtatcgttatcaaagttaacgaagacgag
atgtatccgggcgaagcgggtatcgacatttataacctgaccaaatacacccgttctaac
cagaacacctgtattaaccagatgccgtgcgtgtctctgggtgaaccaatcgagcgcggt
gacgtgctggcagatggtccatctaccgacctcggtgagctggcgctgggtcagaacatg
cgcgtggcattcatgccatggaacggttacaacttcgaagactccatcctcgtatccgag
cgtgttgttcaggaagaccgtttcaccaccatccacattcaggaactggcctgtgtgtcc
cgtgacaccaagctggggccagaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacatcggtgcagaagtgaccggtggc
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgccagaagagaag
ctgctgcgtgcaatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccgaacagcgtttccggtaccgttatcgacgttcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgctggaaatcgaagagatgcagctgaagcaggccaaaaaagacctg
tctgaagaactgcagatcctcgaagctggcctgtttagccgtatctacgcggtgctggtt
gccggtggtgttgaagctgacaagctcgacaaactgcctcgcgatcgctggctggaactc
ggcctgaccgacgaagagaaacaaaatcagctggaacagctggctgagcagtacgacgaa
ctgaagcacgagtttgagaaaaaactcgaagcgaaacgccgcaaaatcacccaaggcgac
gatctggcaccgggcgtgctgaagattgttaaggtatacctggccgttaaacgccgtatc
cagcctggtgacaaaatggcaggtcgtcacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccacacgatgctaacggtacgccggtagatatcgtactgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagatccttgaaacccacctgggtatggct
gcgaaaggtatcggcgataagatcaacgccatgctgaaacagcagcaagaagtcgcgaaa
ctgcgcgagttcatccagcgtgcctacgatctgggtaccgacgttcgtcagaaagtcgac
ctgagcaccttcagcgatgacgaagtgctgcgtctggcagaaaacctgcgtaagggtatg
ccaatcgcgacaccagtgttcgatggtgcgaaagagtctgaaattaaagagttgctgcaa
ctcggcggtctgccttcctctggtcagattaccctgttcgacggtcgcaccggtgagcag
tttgagcgtcaggtaaccgtaggttacatgtacatgctgaaactgaaccacctggttgat
gacaagatgcatgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcacagttcggtggtcagcgcttcggggagatggaagtgtgggcgctggaagca
tatggcgcagcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggc
cgtactaagatgtataaaaacatcgtagacggtaaccatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagagatccgttccctgggtatcaacatcgagctggaa
gacgagtaa
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