Kaistella daneshvariae: EIB71_04615
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Entry
EIB71_04615 CDS
T06920
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kda
Kaistella daneshvariae
Pathway
kda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EIB71_04615 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kda03019
]
EIB71_04615 (rnr)
03016 Transfer RNA biogenesis [BR:
kda03016
]
EIB71_04615 (rnr)
Enzymes [BR:
kda01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EIB71_04615 (rnr)
Messenger RNA biogenesis [BR:
kda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EIB71_04615 (rnr)
Transfer RNA biogenesis [BR:
kda03016
]
Prokaryotic type
tRNA degradation factors
EIB71_04615 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
Rrp44_S1
OB_HELZ2
S1CSD-TOTE-2
Phage_holin_2_2
Motif
Other DBs
NCBI-ProteinID:
AZI66996
UniProt:
A0ABM7C7N5
LinkDB
All DBs
Position
1022159..1024324
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AA seq
721 aa
AA seq
DB search
MPRKKKYISAKNDHKLQEIGRLILKFMNNNSAKIYNYKQISDGIDYKNPRQRELVIQALH
QLLSVQRIKEVEKGKYIINLKIEDTLTGIIDFNQTGNAYVKVDGLEDDIFVHSKNVKDAL
QGDTVLIVTYHFKGRKIEGSVLEVIERSRTEFVGTFQFIKHKDFGFVVGDKKRINTDIFV
PKGKIGGAQDGDKVVVKMIDWKQGEKNPEGEIIKVLGAPGEHETEIHSILAEYGLPYSFP
EDVEEEANKLDRSIRPEEVAKRRDMRDICTFTIDPKDAKDFDDALSIQKLENGNWEIGVH
IADVSHYVVPGTLIDDEAYDRATSVYLVDRVVPMLPEVLSNDVCSLRPNEDKYTFSAVFE
ITDEAEVKKEWFGRTVIHSDRRFAYEEAQERIEKKDGDLAEEILVLDRLAKILRKERIDN
GAITFDRSEVRFNLDENNEPIGVYFKVSKDSNHLIEEFMLLANRKVSEFVSLNRRGAPTG
NTFIYRVHDDPDPAKLEALRDFVGTFGYKMNLANTKKVAESLNNLLKEVQGKGEENMIET
LAMRSMSKAVYSTDPIGHYGLGFEYYSHFTSPIRRYPDLIAHRLLQHYLDGGKSPNKEEY
EIKAKHCSSMERLAADAERDSIKFMQVKFMEKHIGEEFTGVISGVADFGFWVQIPENGAE
GLIKLRDLMDDSYTYDAKNHLVQGSRTGNKYQLGDTVTIKVMKANLIQKQLDFKIVEPHN
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgccaagaaaaaagaaatatatttccgcgaaaaacgaccataaattacaggaaatcggt
cgcctgattttaaaatttatgaataacaattccgccaaaatctacaattataagcagatt
tcggatggtattgattacaaaaatcctcgccagcgtgaactggttatacaggcgctgcat
cagctgctaagtgtgcaacgcatcaaggaggtggaaaaaggaaagtatatcatcaactta
aaaatcgaggatactttgacgggtatcattgattttaaccaaaccggaaacgcctatgta
aaagtggacggtttagaggacgatattttcgtgcactctaaaaacgtaaaagacgcttta
cagggagataccgtacttattgtaacataccattttaaaggccgcaagattgaaggttct
gtgcttgaagtcatcgaaagaagccgaactgagtttgtggggacttttcagttcataaaa
cataaggattttggttttgtagttggcgataaaaagcgcataaatacggacattttcgtg
ccgaaaggaaaaattggcggtgcccaggacggtgataaagtggtggtaaaaatgatcgac
tggaaacagggtgaaaaaaatccggaaggtgaaatcattaaagtgctgggcgcgcctggc
gaacatgaaaccgaaattcattctattttagcagaatacggtctgccctactcttttccc
gaagatgttgaagaagaagccaataagctcgaccgcagcatccgaccagaggaagttgcc
aagcgtcgggatatgcgcgacatttgcactttcaccatcgatccaaaagatgcaaaagat
tttgatgacgctttatccatacaaaaattggaaaacggcaactgggaaatcggtgttcac
atcgccgatgtttcgcattacgttgtgccgggaaccttaattgatgatgaagcttatgac
cgtgcaacttcggtgtatctcgtagaccgcgtggttccgatgttaccggaggtcttaagt
aatgatgtctgctctttgagaccaaatgaagataaatacactttttccgcagtgttcgaa
atcaccgatgaagctgaagtgaaaaaagaatggtttggacgtaccgtaatacattccgat
cgcagatttgcttacgaagaagcacaggaacgaattgagaagaaagacggcgatttagcc
gaagaaattttagttttagaccgcttggcaaaaattctccgtaaggaacggattgacaac
ggagcaatcacctttgacagaagcgaagttcgctttaatttggacgaaaataatgagccg
attggcgtgtattttaaagtaagcaaagattcgaaccatcttatcgaagaatttatgctg
cttgcgaaccgaaaagtttcagaatttgtttccctcaaccgacgcggggcgccaacggga
aatacctttatttatagagtacacgatgatccggatccggcaaaactggaagcacttcgc
gatttcgttggaactttcggttataaaatgaatttggcaaatacaaaaaaagtcgccgaa
tcgctcaataatttgttgaaagaagtacaaggaaaaggtgaggaaaatatgattgaaacg
ctggcaatgcgttcaatgagcaaagcagtatactccaccgatcctattggtcactacggt
ttaggttttgaatattattcgcatttcacctccccaatccgccgttaccccgatttaata
gcgcaccgcctgctccagcattatcttgatggtggaaaatctccaaataaagaagaatac
gaaatcaaagctaagcactgcagttcgatggaaagactggccgctgatgcggaaagagat
tcgattaaatttatgcaggtgaagtttatggagaaacatatcggtgaagaatttaccggt
gtaatttcaggtgttgcagatttcggtttctgggttcaaattcctgaaaacggcgctgaa
ggtttaataaaattacgtgatttaatggatgattcttacacctacgatgcgaaaaatcat
ttggtacagggcagcagaaccggaaataagtaccagcttggcgataccgttacaatcaaa
gtaatgaaagcaaatcttattcagaaacaacttgactttaaaattgtagaaccgcacaat
tcttaa
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