Kaistella daneshvariae: EIB71_05635
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Entry
EIB71_05635 CDS
T06920
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
kda
Kaistella daneshvariae
Brite
KEGG Orthology (KO) [BR:
kda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kda03032
]
EIB71_05635 (topA)
03400 DNA repair and recombination proteins [BR:
kda03400
]
EIB71_05635 (topA)
Enzymes [BR:
kda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
EIB71_05635 (topA)
DNA replication proteins [BR:
kda03032
]
Prokaryotic type
DNA Topoisomerases
EIB71_05635 (topA)
DNA repair and recombination proteins [BR:
kda03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
EIB71_05635 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
AZI67179
LinkDB
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Position
1233753..1236311
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AA seq
852 aa
AA seq
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MSKNLVIVESPAKAKTIQKYLGKDFEVKSSFGHIRDLPKKGMGINLETFSPDYEVSADKK
KLVAELKAAVKKADVVWLASDEDREGEAIAWHLAQELKLKDENTRRIVFHEITKNAILKA
IENPRNIDQNLVNAQQARRILDRIVGFEMSPVLWKKVKTGLSAGRVQSVAVRLVVERELE
IRNFTPKSTFKLDGIFLNAEKQEIAAKLKKDFAQEADAEAFLKQCQQTDFKVLNVETKPG
TRTASAPFTTSTLQQEASNRLGYGVTATMRVAQRLYEEGFITYMRTDSVNLSQEAINGAK
AQILAEYGEKYSNPRNYTTKSSSAQEAHEAIRPTDFSVKSIGDVQLNKLYQLIYRRTLAS
QMTNAKIEKTVIEIGDQKLPHHFEAQGEVIIFDGFLKAYGIVKTEDDEEENNEKLLPKVS
VGEALDFRKIEATEKFTRPASRYTEAGLVKKLEELGIGRPSTYAPTIQTIQNREYVDKRE
ILPQEREILKMSLEKSELKKEILTEKFGGDKNKFVPTDIGEVVNEFLTQNFAEILDYGFT
AKVEQDFDLIANGEEKWKEVLQGFYKDFHPKIEDVEENADRATGERILGKDPKTGKNVLT
RIGRFGPMVQIGEQDDEEKPIFASLMANQNIATITLEEALELFKIPFDLKEYEGQTVTVG
VGRFGPYVKWGETFISIPRGEDPLSITQERAEEIIEEKKVADAPIATYKGEPVTKGTGRF
GPFIKYQSIFINVPKRYDFENLSQNDISELIEAKLEKEANRYIQQWPEEKISLENGRWGP
FIKFGKAMFKIPKNKKEEKYTAEELAEIPLEEVKKWITAQDKNAFKTKAKKAPAKKPAAK
KPAAKKPAAKKK
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaatttagtgattgtggaatcaccggcgaaagctaaaacgattcaaaaatat
ttggggaaggatttcgaggtgaaatcgagcttcggccacatccgcgatctgcctaagaaa
ggcatgggtattaatctggaaactttttctccggattatgaagtttctgcagataaaaag
aagctcgttgctgaattgaaagccgctgtaaaaaaggcagatgttgtctggctcgcctcc
gatgaagaccgcgagggtgaagcaatcgcctggcatcttgcgcaggaactaaaactgaaa
gacgaaaatacccgacgaattgttttccacgaaattacgaaaaatgccattttaaaagcg
atagaaaatccccggaatatcgaccagaatctggtaaatgcccagcaggcaagaagaatt
ctggaccggattgtaggttttgaaatgtcgccggtactttggaaaaaagtgaaaaccggg
ttatctgcgggacgtgtgcaatctgttgccgtgcgcttggtagtggagcgcgaactggaa
atccgaaattttacaccaaaatctaccttcaaactggacggaattttcctgaatgccgaa
aagcaggaaattgcagcaaagctgaaaaaagatttcgctcaggaagctgatgcagaagca
tttttaaaacaatgtcagcaaacggattttaaagttctgaatgtcgaaacaaaacctggt
acgcgtacggcatcagcaccgtttaccacttccactttacagcaggaagccagcaacaga
ctgggttacggcgtaacagccacaatgcgcgttgcgcaaagattgtacgaagaaggattc
attacttatatgagaacagattcggtaaatctttctcaggaagccatcaacggggcaaaa
gcgcaaattttagccgaatacggcgaaaaatattcaaatcccagaaattataccaccaaa
tcctcatcagcgcaggaagctcacgaggcgattcgaccaaccgatttttcggtaaaatcc
atcggtgatgtgcagttgaataaattgtatcagcttatttatagaaggactttagcatcg
cagatgacgaatgctaaaattgaaaaaaccgtcattgaaattggtgatcaaaaactgccg
catcattttgaagcgcagggtgaagtcatcatttttgatggtttcttgaaagcctacggc
attgtaaaaaccgaagacgacgaagaagaaaacaacgaaaaattattgccgaaagtttca
gtcggtgaagcgttggatttccgcaaaattgaagctacagaaaagtttacacgtcccgct
tcgcgttatacagaagccggtctggtaaaaaaactggaagaattgggaatcgggcgacct
tccacgtatgcgccaaccattcaaaccattcaaaaccgcgagtatgtggataaacgcgaa
attctgcctcaggagcgggaaattttaaaaatgtctttagaaaaatcagagctgaagaag
gagattttaaccgaaaaatttggcggcgacaaaaacaaatttgtcccgacagatattggt
gaagtggtgaacgaatttttaacccaaaattttgctgaaatcctggattatggttttacg
gcaaaagtggagcaggattttgaccttattgccaacggtgaagaaaagtggaaagaggtt
ttgcaaggcttctataaagatttccacccgaaaattgaagacgtagaagaaaatgcagat
cgcgcgacgggagaaaggattttaggtaaggacccaaaaacgggcaaaaatgtgcttact
agaatcggcagatttggaccaatggttcaaatcggcgagcaggacgacgaagaaaaacca
atttttgccagcttgatggcaaaccaaaatatcgccactattactttggaagaagcgctg
gagctctttaaaattccgtttgacttaaaggagtacgaaggacaaaccgttaccgttggt
gtgggacgatttggtccgtatgtaaagtggggtgaaacttttatcagcattccgcgtggt
gaagatccgctttcaatcactcaggaaagagctgaggaaatcattgaagaaaagaaagtt
gccgatgcgccgattgccacctataaaggtgaaccggtgactaaaggaaccggcagattt
ggtcctttcatcaaataccaatcgattttcatcaatgtgccgaaacgctatgatttcgaa
aatctttcgcaaaacgatattagtgagctgattgaagcaaagttggaaaaagaagcaaac
cgctacatccaacagtggccggaggaaaaaatttcgctggaaaacggaagatggggacct
ttcatcaaatttgggaaagcgatgtttaaaattccgaaaaacaaaaaagaagagaaatat
actgctgaagaattagcagaaattccgttagaagaggttaaaaagtggattaccgcgcag
gacaaaaatgctttcaaaaccaaggctaaaaaagcacctgcgaaaaagcccgcagctaaa
aagcctgctgcaaaaaagcccgcggctaaaaagaaataa
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