Kaistella daneshvariae: EIB71_06500
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Entry
EIB71_06500 CDS
T06920
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
kda
Kaistella daneshvariae
Brite
KEGG Orthology (KO) [BR:
kda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
kda03009
]
EIB71_06500 (rlmD)
Enzymes [BR:
kda01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EIB71_06500 (rlmD)
Ribosome biogenesis [BR:
kda03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EIB71_06500 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
MTS
Cons_hypoth95
Methyltransf_15
TRM5-TYW2_MTfase
N6_N4_Mtase
RrnaAD
Methyltransf_11
Methyltransf_4
PCMT
NpmA
Baculo_LEF5
Motif
Other DBs
NCBI-ProteinID:
AZI67340
LinkDB
All DBs
Position
1410704..1412110
Genome browser
AA seq
468 aa
AA seq
DB search
MRKKNKNIILENIKLVSAGSKGVAVGKTLEGKTVLVSGAVPGDVVNARVRKSKSNYYEAE
MVEIVEKSPFRVEPRCIHFGVCGGCKWQNLAYEKQLEFKQDEVYNHIKRIAGIEDFETLP
ILGSEEQYFYRNKMEFSFSNARWLTQYEISAEENYGNRDALGFHIPGMWSKILDLKECYL
QEDPSNAMRLAIRNYAVDNGLEFFDVRNQSGFLRTVMFRQNSRGEWMVLFQLFRKEENQE
KLFDFLLEKFPEIKTLMFAINSKQNDSLYDQDVQIYSGPGFLMEEMEGLRFKIGPKSFFQ
TNYKQALNLYQKTLEFADLKGDEVVYDLYTGTGTIAQYVARKAKHVIGIESVQESINSAI
EHAALNGLDNCTFYCGDMKEIFNDEFIAQHPKADVLITDPPRDGMHQKVVEQILKIAPEK
IVYVSCNSATQARDLALMKDHYRLVKILPVDMFPQTHHVENIALLYRI
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagaagaataaaaatattattttagaaaatataaaactggtttctgcgggctcg
aaaggcgttgccgtagggaaaaccctggaaggaaaaaccgttttggtttccggcgcggtg
ccgggcgacgtggtgaacgcacgcgtaagaaaatccaaatccaattactacgaagcggaa
atggtggagattgtagaaaaatcaccgtttcgtgtggagccaagatgtatccatttcggt
gtttgcggcggctgtaaatggcagaatttggcctacgaaaaacagctggaattcaagcag
gacgaagtgtacaatcatatcaaaagaattgcgggcattgaagatttcgaaactttgcca
attttgggcagtgaagagcagtatttttaccgcaataaaatggaattttctttttccaat
gcgcgctggctcacgcaatatgaaatcagcgccgaagaaaattacggcaaccgcgatgct
ttaggttttcatattccgggaatgtggagcaagattctggacttaaaagaatgttatctt
caggaagatccgtcgaacgcgatgcgtttggcgatccggaattacgcggttgataatggt
ttggaatttttcgatgttcggaaccaaagcggttttctgcgcacggtcatgttccgccaa
aattctcgcggtgaatggatggttttgttccagcttttccgcaaagaagaaaatcaggag
aaattattcgatttcttactggaaaaatttccggaaatcaagactttaatgttcgccata
aattccaaacaaaatgattcgctttacgatcaggacgttcagatttattccggacccgga
tttttaatggaggaaatggaaggtttgcgttttaaaatcggtccgaaatcgtttttccag
acgaattataagcaagctttaaatctttaccaaaaaaccctggaatttgccgatttaaaa
ggtgatgaggtggtttatgatttgtacacgggaaccggaaccatcgcgcaatatgtggca
agaaaagcgaaacatgtcatcggaattgaatcggtgcaggaatccattaattccgccatc
gaacacgcggcgctgaacggtttggataattgtacgttctattgtggcgacatgaaggaa
atcttcaatgatgaatttatcgcgcagcatccaaaagctgatgtcctgattacggatccg
ccgcgcgacggaatgcaccaaaaagtggtggaacaaatcctgaaaattgcaccggagaaa
atcgtttatgtcagctgtaattcggcaacgcaggcgcgtgatttggccttgatgaaagat
cattaccgtttggtgaaaattttacctgtagatatgtttccgcaaacgcaccatgtggaa
aatattgccctgttatatcgaatataa
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