Candidatus Kinetoplastidibacterium desouzai: CDSE_0474
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Entry
CDSE_0474 CDS
T02465
Name
(GenBank) DNA helicase II/ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
kde
Candidatus Kinetoplastidibacterium desouzai
Pathway
kde03420
Nucleotide excision repair
kde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CDSE_0474
03430 Mismatch repair
CDSE_0474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kde03400
]
CDSE_0474
Enzymes [BR:
kde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CDSE_0474
DNA repair and recombination proteins [BR:
kde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CDSE_0474
MMR (mismatch excision repair)
Other MMR factors
CDSE_0474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
AAA_30
Viral_helicase1
AAA_11
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AGF46791
UniProt:
M1LRM9
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Position
272527..274764
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AA seq
745 aa
AA seq
DB search
MNLNDLNAEQEKAVTTGSSHTLVLAGAGSGKTKVLSSRMAWLLNTKQATTYDILAVTFTN
KAAKEMISRVSSMLTTDIKGLWIGTFHGLCHKMLRIHWRESNLLQSFQIIDMSDQLSLIK
RIIKSNDVNESKNQARDLQKFINYHKEYGIRSSKVEVYDSYSKKLTELYQEYEIQCSREG
LVDFSELLLKSYELLKSDDNIRNYYQDRFRFILVDEFQDTNNLQYEWLRLLIGKSTSVFA
VGDDDQSIYAFRGANVGNISLFDKYYAKGNIIRLEQNYRSLGHILGAANSLIKNNTGRLG
KKLWTQSGDGDKVSVVETFNDSMESQWVVDEIKKLVKNNKVNPDEIAILYRSNAQSRVLE
HAFFSRGVSYKVYGGLRFFERQEIKHALAYLRLIVNSNDNNSWIRVVNFPIRGIGPRTLD
SLWAISREYDVSLYDAVKYYQGKSRANLVAFNNIINSLKELSNKLTLSSLVEYLLDFTGI
NSYYQNSKEESDKDRLENLKELVTAAMVFSTEDGYIDIPASSLLNSSLQDSNVFIEEKMT
PLLSFLSHASLEAGDGQIDDNQPSVQLMTVHAAKGLEFRVVFITGVEEGLFPHENSVVDS
SSVEEERRLMYVAITRAKEKLYITMANSRMLRGQTRYSSRSRFIQEIDNDHINFIKKQNI
NNVNVINKKYVYTDTLRANSNNFKSVASEVSVNNNKFYIGQHVRHKSFGDGVIVKLIGSG
DDCQAQINFTNSGVKTIMLRIAKFE
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaatgatttaaatgcagagcaggagaaagctgtaactactgggtcttctcat
actttggttttagctggagctggaagtggtaaaaccaaagttctttcttctagaatggct
tggttacttaacacaaaacaggctactacttatgatattttggctgttacttttaccaat
aaagcagcaaaagaaatgatatctagggtatctagcatgttaactacagacataaaagga
ttatggataggaacttttcatggtttatgccataaaatgcttagaattcattggagagaa
tctaatttgttgcagtcatttcagataatagatatgtctgatcagttgtctttaataaaa
cgtattataaaatctaatgatgttaatgaatctaagaatcaagcaagagatttgcaaaaa
tttataaattatcacaaagagtatggtattagatcatctaaggtagaggtctatgattct
tatagtaaaaaattaacagaactttatcaagagtatgagattcaatgttctcgtgagggt
cttgttgatttttctgagttattgttaaagtcttatgagcttttgaaatcagatgataat
attagaaattattatcaagatagatttcgctttattttagttgatgagtttcaagatact
aataatctacaatatgaatggttgcgtttattaataggaaagtcaacatcagtgtttgca
gtaggagatgatgatcaatctatttatgcatttagaggtgctaatgtaggtaatatatct
ttatttgataaatattatgctaaaggcaatataattagattagagcaaaattatcgttct
ttaggtcacatattaggagcagctaattctttaattaagaataatactgggcgtttaggt
aaaaaattatggactcagagtggtgatggcgataaagtttctgttgtagaaacatttaat
gattctatggaatctcaatgggtagttgatgagatcaaaaaacttgttaaaaataacaag
gttaatccagatgaaatagctattttgtatagaagtaatgctcaatcaagagtattagag
catgcttttttctcaagaggagtttcttataaggtttatggtggtcttagattttttgaa
cgacaagaaataaaacatgctttggcttatttacgtcttattgttaatagtaatgataat
aattcatggataagagtagtaaatttcccaattcgaggtataggtcctcgcactttagat
tctctttgggctatatcaagagagtatgatgtcagtttatacgatgcagttaagtactat
caagggaaaagcagagctaatttagttgcttttaataatataattaactcactaaaagaa
ttatcaaataaacttactttgtctagtcttgttgaatatcttttagattttactggtatt
aattcttattatcaaaatagcaaagaagaatcagataaggatcgtttagagaatttaaaa
gaattagttactgcggcaatggttttttccactgaagatggttatattgatattcctgct
tcttctttattaaattcttctttacaagatagtaatgtttttatagaagaaaaaatgact
cctttgttatcttttttatctcatgcttctttggaagctggggatggtcaaatagatgac
aatcaaccatctgttcagttaatgacagttcatgctgccaaaggacttgaattcagggtg
gtttttattactggggttgaggagggtctatttcctcatgaaaatagtgttgtcgattct
tctagtgttgaagaagaaagacgtttgatgtatgttgctattactagagctaaagagaaa
ttatatattacgatggctaatagtagaatgttaaggggtcagacaagatattcttctagg
tctcgttttattcaagaaatagataatgaccacataaattttataaagaagcaaaacatt
aataatgtaaatgttattaataagaagtatgtttatacagatacgttaagagctaatagc
aataattttaaatcagttgcaagtgaagttagtgttaataataataaattttatattggg
caacatgtaagacataagagttttggtgatggtgttatagttaagttaataggtagcgga
gatgattgtcaggcacaaataaactttactaactcaggagtcaagaccataatgcttcgt
atcgcaaaatttgaataa
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