Candidatus Kinetoplastidibacterium desouzai: CDSE_0487
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Entry
CDSE_0487 CDS
T02465
Name
(GenBank) excinuclease ABC subunit B uvrB
KO
K03702
excinuclease ABC subunit B
Organism
kde
Candidatus Kinetoplastidibacterium desouzai
Pathway
kde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CDSE_0487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kde03400
]
CDSE_0487
DNA repair and recombination proteins [BR:
kde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CDSE_0487
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CDSE_0487
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
DEAD
UVR
AAA_30
Kinesin
Microtub_bd
P-loop_SecA
DUF87
Motif
Other DBs
NCBI-ProteinID:
AGF46802
UniProt:
M1LM56
LinkDB
All DBs
Position
287136..289154
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AA seq
672 aa
AA seq
DB search
MTFSEFVSFSNSPFNISQPYPPAGDQPEAIDSLLRGVYEGSKYQTLLGVTGSGKTYTMAN
IIARSGKQSLILAPNKTLAAQLYAEMRDFFPNNAVEYFVSYYDYYQPEAYVPSRNMFIEK
DAQINSHIEQMRLSATKSLLERKDTIIVSTVSCIYGIGDVSCYNSIALTLRIGNFLLRNS
IFEQLVLMQYKRNDLDFSRGSFRVRGEYIDVFPAENFDLALRIGLFDDRIESLEIFDPLT
GAIVDRISRFSVYPVTHYAVPRSKVEQAIESIKEELSQQLVVLARENKQLELQRLEQRTL
FDLEMLQETGFCKGIENYSRHLSGGMPGEPPSTLIDYLPEDSLIFIDESHVTLGQISGMY
HGDRSRKENLVMYGFRLPSALDNRPLKFCEFEKRVRQCIFISATPSDYEITHSKYIVEQL
VRPTGLVDPEVEIRPAKTQVDDLLFQIKERISKKERVLVTTLTKRMSENLTDFLNDNGIK
VRYLHSDIDTVERADILRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSE
RSLIQTIGRAARHLNGHAILYADIVTKSMKKAIDETSRRREKQLSFNRINGIEPKGIKKE
IRYLIDGLINNNTIKPSINYDKSLFKNEKKLSKEIKRLEKLMVNYANKLEFEKASSTRDS
LNELKKMFLFNS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgacattttccgaatttgtaagtttctccaatagtccttttaatatttctcaaccttac
ccgccagctggtgaccagccagaagctattgatagtttgttaagaggtgtatatgaagga
tctaaatatcaaacccttttaggagttactgggtcgggtaaaacatataccatggctaat
attatagctcgttcaggtaaacaatctcttattttagcacctaataaaacattagctgct
cagttgtatgcagaaatgagagatttttttccaaataatgcagtagaatatttcgtttct
tattatgattactatcaaccagaagcgtatgttccttcacgtaatatgtttattgagaaa
gatgctcaaattaattcacatatagaacaaatgcgtttgtcagctactaaaagcttatta
gaaaggaaagatacaataatagttagtactgtttcatgtatttatggtattggagatgta
tcttgttataattctattgctttaacattaaggattggtaattttttattaagaaatagt
atttttgagcagcttgttttaatgcaatataaaagaaatgatttagattttagtagaggt
tctttcagggtaagaggtgaatatattgatgtttttccagcggagaattttgatcttgct
ctaagaataggattatttgatgataggatagagtctctggaaatttttgatccattaact
ggtgctattgttgatagaatatcacgattctctgtttaccctgttactcactatgcagtt
ccaagatctaaagtagaacaggctatagagtcaatcaaagaagaattgtctcaacaattg
gttgttttagcaagagaaaataaacaattagagttacagcgtttggaacagcgtactttg
tttgatttggaaatgttgcaagaaactggtttttgtaaaggtatagagaattatagtagg
catttgagtggaggtatgcctggagaaccacctagtacattaatcgattatttacctgaa
gattcattaatttttattgatgaaagtcatgttactcttggtcaaatatcaggaatgtac
catggagatagatctcgcaaagagaatctagttatgtatggttttcgtctaccttctgct
ttagataatagacctttgaaattttgtgaatttgaaaaaagagttaggcagtgtattttt
atttcggcaactccttctgattatgagataactcattctaaatatattgttgagcagtta
gtgagaccaacaggattggttgaccctgaagtagaaataaggccagctaaaacacaagtt
gatgatttattgtttcagataaaggaacgaatttcaaagaaagaaagagttttagtaact
accttaactaaacgcatgtcagagaatctaactgatttcttaaatgataatgggataaaa
gttagatatttgcattctgatatagatacagttgaacgagcagatatattaagagattta
cgtttgggtgtttttgatgttttggtgggaataaatttattaagagagggtttggatatt
cctgaggtttcactagtggccatattagatgctgataaggaaggatttctaagatctgaa
cgtagtttaattcaaactataggtagggcagcaagacatttaaatggtcatgcgattctt
tatgctgatattgttactaaatctatgaaaaaagctattgatgaaacttctagaaggaga
gaaaaacaattaagttttaataggattaatggtattgaacctaaaggtataaagaaagaa
attcgttatttaatagatggtcttataaataataatactataaaaccaagtattaattat
gataagagtttatttaaaaatgaaaaaaaattatctaaagaaataaaaagattagagaag
cttatggttaattatgctaataaattggagtttgaaaaggcttcttctactagagattct
ttaaatgaattaaaaaaaatgtttctttttaattcttaa
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