Candidatus Kinetoplastidibacterium desouzai: CDSE_0553
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Entry
CDSE_0553 CDS
T02465
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
kde
Candidatus Kinetoplastidibacterium desouzai
Pathway
kde03410
Base excision repair
kde03430
Mismatch repair
kde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CDSE_0553
03430 Mismatch repair
CDSE_0553
03440 Homologous recombination
CDSE_0553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kde03400
]
CDSE_0553
DNA repair and recombination proteins [BR:
kde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CDSE_0553
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CDSE_0553
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CDSE_0553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
LON_substr_bdg
Motif
Other DBs
NCBI-ProteinID:
AGF46860
UniProt:
M1M3N7
LinkDB
All DBs
Position
complement(344038..345756)
Genome browser
AA seq
572 aa
AA seq
DB search
MDCLFKLKTRNIEQQHSQKLIENGIHPLLSRLLSSRGIEQLIDIHYEWISLLNPIKLNQI
EKASKFLANSIINNKRILIVADYDCDGATACAVGIRGLRSMGGNVDFIVPNRFNNNYGLT
PEIIKQACEKSNTKPDIIITVDNGIASVEGVEYAKKIGIDVIITDHHLPGKILPNALAII
NPNNQGCNFPSKNLSGVGVIFYLMIHLRSEMRNNGTYNKDTAPKLNELVDLVALGTIADL
VKLDKNNRLLVTQGLKRIRLNNTHPGIKALFRISNKNIENATTSDLGFSIAPKINAAGRL
SDMSLGIHCLITNDYNEAMKIANKLNEINNERKNIQEKTNLQAIKEINTYRSDLKYSICL
ANDNWNHGIVGLVSSKLKEKYWKPSIAFAPSNDLELKGSGRSVNGINIKDILDLISKNYP
GVIKQFGGHAMAVGLTINKNNFQKFTFAFEEIVKNLTKNNQPEAIIENDGSLEIEFANVE
TANLLKKQVWGSGFEEPVFIDNFEVISQKLINDKHLKLSIKRNNKIFDAICFDHKEVNYK
HIKAVYKLDINVWNGASNLQLVIQLIIPNKNN
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggactgcttatttaaattaaaaactagaaatatagaacaacaacatagtcaaaaatta
atagaaaatggcatacatcctttattatctagattattatcatctagagggatagaacaa
ctaattgatattcattatgaatggataagtctattaaatcctataaagcttaatcaaata
gaaaaagcaagtaaatttctggccaactcaattattaataataaaagaattttaatagta
gctgattatgattgtgatggtgctacagcttgtgctgtaggaataagaggtctgagatct
atgggggggaatgtcgattttattgttccgaacaggtttaataataattatggattgaca
cctgagattataaaacaagcatgtgaaaaatcaaataccaaaccagatattataattaca
gttgataatggaatagcaagtgtagaaggagttgagtacgcaaaaaaaattggaattgac
gtcataataacagatcatcacttaccaggtaaaatactacctaatgctttagcaataata
aatcctaataaccaaggatgtaatttcccttctaaaaatttatcaggagtaggagtaatt
ttttatttaatgattcatttaagatcagaaatgcgcaataatggtacttataataaggat
actgctcctaaattaaatgaattagtagatttggttgccttaggaactatagctgatcta
gttaaattagataaaaacaatagattactagttacacaaggtttaaaacgaataagatta
aataatacacatccaggtattaaagctctatttagaatatctaataaaaatatagaaaat
gcaaccacctcagatctagggttttcaatagcaccaaaaattaatgctgctggtagatta
tctgatatgagtctaggaatacattgtttaatcacaaatgattataatgaagctatgaaa
atagccaacaaactaaatgaaataaacaatgaacgtaaaaacattcaagaaaaaactaac
cttcaagctattaaagaaataaatacttataggtcagatcttaaatacagtatttgtctt
gctaatgataattggaatcatgggatagttggattagtatcttctaaattaaaagaaaaa
tactggaaaccatcaatagcatttgctccttcaaacgatttagaactcaaaggctctgga
agaagcgttaacggcattaacataaaagatattcttgatttaatatcaaaaaattatcct
ggggttattaaacaatttggtggtcacgcaatggctgttggtctaacaattaacaaaaat
aattttcagaaatttacttttgcttttgaagaaatagtaaaaaatctaacaaaaaacaat
caacctgaagcaattatagaaaatgatggatcacttgaaatagaatttgctaacgtagaa
acagctaatttattaaaaaaacaagtatggggatctggatttgaagaacctgtttttata
gataattttgaggttatatctcagaaactaataaatgataaacatctaaaattatccata
aaaagaaacaacaaaatttttgatgcaatatgctttgatcataaagaagtaaattataaa
catataaaagcagtttataaacttgacattaatgtatggaatggagctagcaatctacaa
ttagttatacagcttattatcccaaataaaaataattaa
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