Candidatus Kinetoplastidibacterium desouzai: CDSE_0670
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Entry
CDSE_0670 CDS
T02465
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
kde
Candidatus Kinetoplastidibacterium desouzai
Pathway
kde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDSE_0670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kde03021
]
CDSE_0670
03019 Messenger RNA biogenesis [BR:
kde03019
]
CDSE_0670
Transcription machinery [BR:
kde03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CDSE_0670
Messenger RNA biogenesis [BR:
kde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CDSE_0670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
S1CSD-TOTE-2
Mor
Motif
Other DBs
NCBI-ProteinID:
AGF46955
UniProt:
M1M3Z0
LinkDB
All DBs
Position
451771..453027
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AA seq
418 aa
AA seq
DB search
MHLNELKTMHVSQLLEIASNLEIDNANRLRKQELMFAIMKKRAKQGEQIFGDGVLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRMNLHTGDSIEGEVRTPKEGERYFALVKVEKVN
GVSPEVVKHRIMFENLTPLHPCKHITLEREIKGEENLTGRILDVFSPIGKGQRGLIVASP
KSGKTVMMQHIAHAIAANMPDATLIVLLVDERPEEVTEMQRTVKGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEEGGSLTILGTALIDTGSRMDEVIYEEFKGTGNAEIHLERRMAEKRVYPAINL
NKSGTRREELLIKQELLQKVWVLRKFIHDMDDIEAIEFIIDKMRSTKTNSDFFEMMKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctaaatgaactaaagacaatgcatgtatctcaattactagaaattgcttctaat
ttagagatagataatgctaaccgactacgcaaacaagaattaatgtttgcgataatgaag
aaacgcgctaaacaaggagaacaaatctttggtgatggagtactagaagtattaccagat
ggatttgggtttctaagatcaccagaaacatcttatttagctagtacagatgatatatac
atatcaccatctcaaatcagaagaatgaatctacatacaggcgattctatagaaggtgaa
gtaagaacacctaaagagggagaaagatactttgctctagttaaagtagaaaaagttaat
ggagtttcacctgaagttgttaaacatagaataatgtttgaaaatcttactccacttcat
ccatgtaagcatattacattagagcgagaaattaaaggagaagaaaatcttactggacgt
attttagatgttttttctccaattggcaaaggtcaacgtggattaatagtagcaagccct
aaatctggtaaaactgtaatgatgcaacatatagcacatgctattgcagcaaatatgcct
gatgcaacattaatagttttattagtagatgaaagacctgaagaagttactgagatgcaa
agaacggtaaaaggagaagtagttgcatctacatttgatgaacctgctactagacatgtt
caagttgctgaaatggttatagaaaaagccaaaagattagtagaaatgaaaaaagatgta
gtaatactattagattctattactagattagcaagagcctacaacacagttattccatct
tcaggaaaggttttaactggaggagttgatgcaaatgctttacacagaccaaaaaggttc
tttggagctgctagaaatatagaagaaggaggttctttaactattttaggaacagcctta
atagatactggcagcagaatggatgaagtaatttatgaagaatttaaaggtaccggcaat
gccgagattcatttagaaagaaggatggcagagaaaagagtatatcctgcaattaatctt
aataaatctggaacaagaagagaagaattgctaattaagcaagaattattacaaaaagta
tgggtgttaagaaaatttattcatgatatggatgatatagaagcaatagaattcatcata
gacaaaatgcgttctacaaaaaccaattctgatttttttgaaatgatgaaaaaataa
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