Candidatus Kinetoplastidibacterium desouzai: CDSE_0751
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Entry
CDSE_0751 CDS
T02465
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kde
Candidatus Kinetoplastidibacterium desouzai
Pathway
kde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDSE_0751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kde03019
]
CDSE_0751
03009 Ribosome biogenesis [BR:
kde03009
]
CDSE_0751
Enzymes [BR:
kde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CDSE_0751
Messenger RNA biogenesis [BR:
kde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CDSE_0751
Ribosome biogenesis [BR:
kde03009
]
Prokaryotic type
rRNA processing factors
CDSE_0751
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGF47019
UniProt:
M1LUN2
LinkDB
All DBs
Position
528307..530946
Genome browser
AA seq
879 aa
AA seq
DB search
MKRMLFNATHHEEIRVAIIDGQKLVDLDIETSGREQRKGNIYKGLVTRIEPGLEACFINY
GEDKHGFLPFKEIARSYFKEGIDFRNTRIQDAIKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEERQELKEIIEELDVPHGMSIIARTAGISRSIEELQ
WDLSYLLQLWNAIDQASKENNSPVLIYLESSLVIRAIRDYFSPDINEILIDNQEIVKQAI
AFMSVVMPDNVQRVKFYQNEIPLFSRFQIEHQIETAYSRMIQLPSGGSIIIDHTEALVAI
DVNSAKSTRGADIEETALRTNLEAAEEVARQLRLRDLGGLLVIDFIDMEDTKNQRNLEQK
LREALRVDRARVQMGKISKFGLIELSRQRLRPALNEGSHITCPRCTGIGVIRDTESCSLQ
VLRLIQEEAMKDGTSAVYAQVPIDVATYLSNEKRNDINNIEARLNIKLVLVPNKYIETPH
YNIERVKNDDSKLEETRVSFNLVEIPNNNQSWKNSSENEEKQKPEALVKGRTPSKPAPIV
SNLKYKNKKNIENSKVNPIRTLLTKILSWVGFSSENNDDIYNNLQKNKNNTITPIQNSFK
SSKSEKKYNIKNKNQSKLLQEKQNEQNISLSNTQTSKNTHNLLNNIKNDSNQKNNDALIS
MQKSQDEKNTSTISTHQITKKDKIKNKRSNNNELTNESIANTDENIIKTIEMPTINISAR
DNSENDKKSNYRRRNANSHRKNQKEQHSSKTSTNYFTTNELSNINNEDLSNITTRNVLED
IHKDDSQINSNHKIFNDNYDSAKDKNDDTKNKITKHNSVSLIQNSNIQTNNKNKLQLIET
NYKKESENNNEIINIGRPDYNKNINKVNTKQLKQIETKT
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctatttaacgcaacacatcacgaagagatacgtgttgcaattatagat
ggacaaaaattagtagatctagatatagaaacatctggaagagaacaacgtaaaggtaat
atatataaaggattagttacaagaatagaaccaggtctagaagcatgttttataaattat
ggagaagataaacatggtttcttgccatttaaagaaatagcaagaagttatttcaaagaa
ggtatagattttagaaacacaagaattcaagatgctataaaagaaggacaagaattaata
gtccaagttgaaaaagaagaaagaggcaataaaggagctgcccttacaacttttatatct
ttagctggaagatacttggtgttaatgcctaacaatccaagaggaggtggtgtatctaga
agaatagaaggcgaagagcgtcaggaattgaaagagataatagaagaattagatgtgcct
catggaatgagtatcattgctagaactgctggaattagccgttctatagaagaacttcaa
tgggatttgtcttatcttttacaattatggaatgctatagaccaggcttctaaagaaaat
aattcaccagtattaatttatttggaatcaagtttagttataagagcaataagagattat
ttttcaccagatattaatgaaattttaattgacaatcaggaaatcgttaaacaagccata
gcatttatgagtgttgtaatgcctgataatgtccaaagagtaaaattttatcaaaatgaa
ataccattattctcaagattccaaatagagcatcaaatagaaacagcatattctagaatg
atacaattaccttctggcggatcaataattatagaccatactgaagctttagtagctata
gatgttaattctgctaaatcaaccagaggagctgatatagaagagactgctctaaggaca
aatttagaagctgcagaggaagttgcaagacaattaagattacgtgatcttggtggactt
ttagttattgattttatcgacatggaagacacaaaaaaccaaagaaatcttgaacaaaaa
cttagggaagctctcagagttgatagagctcgtgttcaaatgggtaaaatatcaaaattt
ggtctcattgaactttctagacaaagactacgccctgccctaaatgaaggttcacatata
acttgtcctagatgtactggaattggagtaataagagatactgaatcctgctctttacaa
gtattacgtctaatacaggaagaggctatgaaagatggcacttcagctgtatatgcacaa
gttcctatagatgttgcaacctatctttcaaatgaaaaaagaaatgatataaataatata
gaagctagactaaatataaaacttgttctagttccaaataaatatattgaaaccccacac
tataatatagaaagagtaaagaatgatgattctaagttagaagaaactagagtgagtttc
aatctagtagaaatcccaaacaacaatcaatcatggaaaaattcttctgaaaatgaagaa
aaacaaaaaccagaagctctggtaaaaggtaggacgccatcaaaaccagcaccaattgta
tctaacttaaaatataagaataagaaaaatatagaaaattcaaaagtaaaccctataaga
actttgttaacaaaaatattatcttgggttggtttttctagtgaaaataatgatgatatt
tataataatttacaaaagaataaaaacaatacaataacacctatacaaaattcttttaaa
tcatccaaatcagaaaaaaaatataatataaaaaataaaaaccaaagcaaacttttacaa
gaaaaacaaaacgaacaaaacattagtttatctaatacccaaactagtaaaaatactcat
aatttattaaataatattaaaaatgatagtaatcaaaaaaataatgatgctcttattagc
atgcagaaatcacaagatgaaaaaaatacatcaacaatttccactcatcaaataacaaaa
aaagataagattaaaaataaacgttctaacaataatgagttaaccaatgaaagcattgct
aatacagatgaaaacataataaaaacaatagagatgccaactataaacatatctgcaaga
gataatagtgaaaatgataaaaaatcaaactaccgaagaagaaacgcgaactcacataga
aaaaatcagaaggagcaacattcatcaaaaacaagtacaaactattttacaacaaacgag
ttgtcaaatattaacaatgaagatttatctaacataacaacaagaaatgtattagaagat
atacataaagacgatagtcagataaactcaaaccataaaatctttaatgataattatgat
agtgctaaagacaaaaatgatgataccaaaaataaaataacaaaacataactcagtatct
ttaatacaaaatagtaatatacaaacaaacaataaaaataaactacaattaatagaaact
aattataagaaagaatctgaaaataataatgaaattattaatattggtagacctgattat
aataaaaatattaacaaagttaacactaaacaattaaagcaaatagaaaccaaaacataa
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