Candidatus Kinetoplastidibacterium desouzai: CDSE_0833
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Entry
CDSE_0833 CDS
T02465
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kde
Candidatus Kinetoplastidibacterium desouzai
Pathway
kde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDSE_0833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kde03019
]
CDSE_0833
Enzymes [BR:
kde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDSE_0833
Messenger RNA biogenesis [BR:
kde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDSE_0833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AGF47084
UniProt:
M1LUW5
LinkDB
All DBs
Position
complement(602727..604103)
Genome browser
AA seq
458 aa
AA seq
DB search
MNNVNDFNLRKEIEKDDSTFSFSDFGLNKILLDTIISIGHTKPTPIQEKSIPLILEGRDV
IGAAQTGTGKTAAFVVPIINRLLPFANPSSSPARHLLRSLILVPTRELASQVYESIKIYS
KNTNLRSLVLFGGTDHNSQEDKLRLGSEILVATPGRLIAHMEQGSLHTQNISILVLDEAD
RMLDMGFMPDVDKIVNALPKYKQILLFSATFSNSIRKIGLSYLNNPVEIDVTVPNSIADT
VEQISYMVPNQNKLLAILFILQSKPLESVIIFTNTKLATIKLSSFLFSKNIKCDSIHGDK
NQIDRTIALENFRNGSLNVLVATDVAARGLDVVGVSYVINFDVPFNPEDYVHRIGRTGRA
NNKGSAISLCSYEEETCLLNIEKFTGSKIPRLKLNMPSFSNYDDSFDKNSLKSSILLDID
PLLEPKRVSKNRVVLPANYKNRRNEKKIAILLGGTGRD
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaataatgtaaatgattttaatttgcgcaaagaaatagagaaagatgattctactttc
tcgtttagtgattttggtctaaacaagattttattggatacaataatttctattgggcat
actaaaccaacaccaattcaagagaaatctataccattaatcctagaaggaagggatgtt
ataggagcagcgcaaacaggcactggtaaaacagctgcttttgttgtgcctattatcaat
agattactaccatttgctaatcctagctcgtctcctgcgcgtcatttattgcggtcttta
atattagtacccacacgtgagttagctagtcaagtgtatgaaagcattaaaatatatagt
aagaatactaatttacgtagtttagtattgttcggaggtacagatcataactctcaagaa
gataaattaagattaggttcggagattcttgttgctactcctggaagactgatagctcat
atggagcaaggtagtttacatactcagaatatatctatattggttcttgatgaggctgat
agaatgttagatatgggttttatgcctgacgttgataaaatagtaaatgctttgcctaaa
tataaacagattcttttgttctcagctacatttagtaattctatacgtaagataggtttg
tcttatttgaataatcctgttgagatagatgttaccgtgcctaattctattgctgatact
gttgagcaaatttcttatatggttcctaatcaaaataagttattagctattctgtttatt
cttcaatcgaaaccattggagtctgtaataatttttactaataccaaactagcaactata
aaattatcaagttttttgttttcaaaaaatattaaatgtgattcgatacatggggataaa
aatcaaattgatagaacaatagctttagagaattttcgcaacggtagtttaaatgtctta
gtagcaacagatgttgcggcaagaggtcttgacgtagttggcgtttcatatgttataaat
tttgatgttcctttcaaccctgaggattatgttcatagaattggtagaaccggaagggca
aataataaaggttcagcaatatcattatgttcatatgaagaagagacatgtttattaaat
atagaaaaatttacaggaagcaagattccacgtttaaaattaaacatgcctagtttctca
aattatgatgattcttttgataaaaatagtcttaaaagttcaattttgttagatatagat
ccattattagaacctaaaagagtttctaaaaatagagttgtattacctgcaaattataag
aatagaagaaatgaaaagaaaatagctattttattaggtggtacaggaagagattag
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