Dokdonia sp. 4H-3-7-5: Krodi_0089
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Entry
Krodi_0089 CDS
T01484
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
kdi
Dokdonia sp. 4H-3-7-5
Pathway
kdi03420
Nucleotide excision repair
kdi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Krodi_0089
03430 Mismatch repair
Krodi_0089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kdi03400
]
Krodi_0089
Enzymes [BR:
kdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Krodi_0089
DNA repair and recombination proteins [BR:
kdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Krodi_0089
MMR (mismatch excision repair)
Other MMR factors
Krodi_0089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
ResIII
nSTAND3
DEAD
Motif
Other DBs
NCBI-ProteinID:
AEE18080
UniProt:
F4AXG3
LinkDB
All DBs
Position
complement(97074..99461)
Genome browser
AA seq
795 aa
AA seq
DB search
MDCGFNSCDQSVLCTPAMDSKLEVYIEGLNEAQRAPTLHKEGALIVIAGAGSGKTRVLTL
RIAYLMSQGVDAFNILSLTFTNKAAREMKKRISDIVGSSEAKNLWMGTFHSIFAKILRIE
ADKLGYPSNFTIYDTQDSQRLISAIIKELQLDKDIYKYKQIQNRISSFKNSLITVRAYQN
DPELVEADAMAKRPRMGEIYAEYVDRCFKAGAMDFDDLLLRTNELLNRFPEVLNKYQNRF
KYILVDEYQDTNHSQYLIVKALSDKFQNICVVGDDSQSIYAFRGANINNILNFQKDYENV
AMYRLEQNYRSSKVIVEAANSVIEKNKTRLDKTVWTANPDGGEIIVHRSPTDGEEGRYVA
SSIFENRMNHQLMNGDFAILYRTNAQSRAMEDALRKRDIPYRIYGGLSFYQRKEIKDVLG
YLRVLINPKDEEALKRVINYPARGIGGTTIDKLTVAAKHYGRSMFEVMEKIEQLGPSMNI
NRGTQTKLKNFVTMIKSFQILNEQSDAFTVAEKVAKKTGLLQELKKDGTPEGVARIENIE
ELLNGMRDFVEEQKELADTTGSLAEFLEDVALATSMDNDTGDDDRVALMTIHLAKGLEFP
FVYIVGMEEDLFPSGMSMSTRSELEEERRLFYVALTRAEKQAYLTYTESRYRWGKLVDAE
PSRFIEEIDDKYLDYQTPMMRNRYKSLMDIDEYGEVDKSKLRLKKPVSGTPPRVGNPSQD
QLRKLRKIRPTSGDEPVSSLAGALEAGTVVKHIRFGKGIVVGLEGKGQDQKAEINFENGG
LKKLLLRFAKLEIVS
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggattgtggttttaattcttgtgatcaatccgtactttgtacccctgctatggattca
aaattagaagtatatattgagggcttaaacgaggcccaacgcgctcccacactacataaa
gagggagcattaattgtaattgcaggtgcgggatctggtaaaacgcgagtgcttacctta
cgtattgcttacctcatgtctcagggagtagacgcctttaacatcttatcactcaccttt
acaaataaggcggcacgtgagatgaaaaagcgtatctctgatattgtgggtagctctgag
gcaaagaatttatggatgggaacctttcactccatttttgccaaaatcttgcgtattgag
gcagataagctagggtacccgtctaactttacgatttatgatacccaagactcccagcgt
ttaataagcgcgattatcaaggagctgcagctggataaggatatctataagtataagcag
attcaaaaccgtatttcttcttttaaaaacagcttgattacggtacgtgcgtatcaaaat
gatcctgagctggtagaggcagatgcgatggcaaaacgcccgcgtatgggggagatttat
gcagagtatgtagatcgctgttttaaggcaggagcgatggactttgatgatttactgcta
cgcacaaatgagttgcttaaccgttttccagaggtacttaataaataccagaatcgtttt
aaatatatattggtagatgagtatcaagatactaaccatagccagtatcttattgtaaag
gcactgtctgataagtttcagaatatctgtgtagtgggagatgactcgcagagtatctac
gccttccgtggggcaaacattaataacattttgaacttccagaaggattatgagaatgta
gcaatgtaccgcctagagcagaattaccgctcctcaaaagtgatagtggaggcggcaaac
agtgtgatagaaaaaaacaaaaccagactggataaaacagtatggaccgcaaacccagat
ggtggtgagattatcgtgcaccgctctcctacagatggtgaggagggacgctatgtggcg
agttctatttttgaaaatagaatgaatcaccagctcatgaatggagattttgcgatttta
tatagaacaaacgcacagtcacgtgcgatggaggatgccttgcgcaagcgagatatccca
taccgtatttatggagggttatccttctatcaacgtaaggagattaaggatgtgctgggc
tacctgcgcgtgcttattaacccaaaagatgaggaagcacttaaacgtgtgattaactat
cctgcaagaggaataggcggtacgaccatagacaagcttacggtggcggcaaaacactac
gggcgttctatgtttgaggtgatggagaagatcgagcagctgggtccctcgatgaatata
aatcgtggtacacagactaagcttaagaactttgtaacgatgattaagagtttccagatt
cttaatgagcaaagtgatgcctttaccgtggcagaaaaggtagcaaagaaaacaggactc
ttacaagaacttaaaaaggatggaactccagagggtgttgctcgtatagaaaatatagag
gagctgctcaacggtatgcgcgactttgtagaggagcaaaaggagctagcagatactaca
ggatcgcttgcagagttcctagaagatgtggcacttgccacaagtatggataatgatacg
ggtgatgatgaccgcgtggcgcttatgaccatccacctagcaaagggacttgagtttcca
tttgtatacatcgtgggtatggaggaagatctctttccttctggtatgagtatgagcacg
cgtagtgagctagaggaggagcgccgcttgttttatgtggcacttacaagagcagaaaag
caggcataccttacctatacagagtctagatatcgctggggtaaactggtagatgcagag
cctagccgttttatagaggaaatagatgataagtatctggattaccagacgcctatgatg
agaaaccgctataagtcactcatggatatagatgagtatggcgaggtagataaaagtaaa
ttacgattaaagaagccggtgagtggtacgccacctagagtgggtaatccatcacaagac
cagctacgtaagttgcgcaagataagacctactagcggtgatgagcctgtctcttcactc
gcgggagcactagaagcgggtacggtggtaaagcatatccgttttggtaaagggattgtg
gtaggactagaagggaaaggccaagatcaaaaagcagaaattaattttgaaaacggtggt
ctcaaaaagttgttactacgttttgccaaacttgaaatcgtaagctag
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