Dokdonia sp. 4H-3-7-5: Krodi_0380
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Entry
Krodi_0380 CDS
T01484
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kdi
Dokdonia sp. 4H-3-7-5
Pathway
kdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Krodi_0380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kdi03019
]
Krodi_0380
03400 DNA repair and recombination proteins [BR:
kdi03400
]
Krodi_0380
Enzymes [BR:
kdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Krodi_0380
Messenger RNA biogenesis [BR:
kdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Krodi_0380
DNA repair and recombination proteins [BR:
kdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Krodi_0380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
AEE18366
UniProt:
F4AY99
LinkDB
All DBs
Position
complement(450085..452283)
Genome browser
AA seq
732 aa
AA seq
DB search
MGTRQIDLHEELKRYFGFSQFKGLQEEVIRSIVGGNHSFVIMPTGGGKSLCYQLPALIAE
GTAIVVSPLIALMKNQVDALRGISQEEGIAHVLNSSLTKGEIKKVKEDITRGVTKLLYVA
PESLTKEENVEFLRGVTVSFLAIDEAHCISEWGHDFRPEYRNLRKIIGRIGDNIPIIAVT
ATATPKVQEDILKNLGITDANTFKASFNRPNLYYEVRPKTAQVDADIIRFVKQNEGKSGI
IYCLARKRVEELAQTLQVNGLKAVPYHAGLDAKTRVRHQDMFLMEDVDVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMSGKPIAEQ
EIGHALLQEVVAFAETSMSRRKFILHYFGEEFDNITGEGGMLDDNMRNPKNQHEAKEELV
KVLSVIRDTNEIYKSKEIVLTLRGKENAIISSHKTHEQPFFGIGHDQKKEYWFALIRQAL
VAGYIKKDIETYGVVKMTPQGLDYIENPVSFMMTDDHVFDANTDNAIVSAQKAGAGADKK
LLEMLKDLRKKVAKKLDVPPFVVFQDPSLEDMSIKYPVSVEELGNVHGVGDGKAKKYGKE
FVALIDRYVSDNEILRPDDLVVKSTGANSGLKLYIIQNVDRKLPLDDLASAKGKDMVDFI
KEMEAIVFSGTRLNIDYWINDILDEDQQEELHDYFMEAETDKIEVAMEEFDGDYEDEELR
LYRIKFMSEVAN
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggggacaaggcaaatagacttacacgaagaacttaaaagatattttggctttagtcag
ttcaagggtctgcaggaagaagttataagaagcatcgtaggtggtaatcacagttttgtg
attatgcccacaggaggtggaaaatcattatgttatcagttacctgcacttattgcagag
ggtactgctattgtggtatcgccacttatagcattaatgaaaaaccaagtagatgcactt
agaggtatctcacaagaagagggaatagctcatgtacttaacagttcgctcactaaagga
gagataaaaaaagtaaaagaagatatcactagaggagtgacaaaactcttgtacgtggct
cccgagtcacttactaaagaagaaaatgttgagtttttaaggggagttactgtttctttt
ttggctatagatgaagcgcactgtatctcagagtggggacatgattttagaccagaatac
cgtaatttacgtaagattataggtagaataggtgataatatcccaattatagcggtaaca
gctactgctactccaaaagtacaagaggatattcttaaaaacttagggattacagatgca
aatacttttaaggcgtcatttaataggcctaatctatattacgaggtacgacctaaaacg
gcacaagtagatgcagatattattcgttttgtaaagcaaaatgaaggtaagagtggtatt
atatattgcctcgcacgtaagcgtgtagaggagttagcgcaaacattgcaagtaaacgga
cttaaagcggtaccatatcatgcaggactcgatgcaaaaacacgagtgagacatcaagat
atgttcttgatggaagatgtagatgtggtagttgctaccatagcttttgggatgggaatt
gataagccagatgtaagatttgttatacatcatgacattcctaaaagtatagagagctac
tatcaagaaactggtagagcgggaagagatggaggagaaggacattgtcttgctttttat
gcatataaggacatagagaagcttgagaaattcatgagtggcaagcccattgccgaacag
gaaataggtcatgccttacttcaagaagtagtagcttttgcagaaactagtatgtctagg
cgtaaatttatacttcactattttggagaagagtttgataatattactggagaaggaggc
atgcttgatgataacatgcgtaatcctaaaaatcaacatgaggcaaaagaggaacttgta
aaagtgttatctgtaatacgagatactaacgagatctataaaagtaaagagattgttctt
acgttaagaggaaaggaaaatgctattattagttcgcataaaactcatgagcagccattt
ttcggtataggtcatgaccagaaaaaggaatactggtttgcccttatacgtcaagctctc
gttgctggatatataaagaaggatattgagacttatggcgttgtaaaaatgacaccacaa
ggtctagattatatagagaaccctgtctcatttatgatgacagatgatcatgtatttgat
gcaaatactgataatgcaatagtatctgctcaaaaagcaggagctggagccgataagaag
ctcctagaaatgctcaaagacttgcgaaaaaaagtagcaaagaagcttgatgtgccacca
tttgtggtttttcaagacccttcactagaagatatgtctattaaataccctgtaagcgta
gaagaacttggtaatgtacatggagtaggtgatggtaaagcaaagaaatacggaaaagaa
tttgtagcgctcatcgatagatatgtttctgataatgaaattttaagaccagacgatctc
gttgtaaaaagtacaggagcaaatagtggattaaaattatacattatccaaaacgtagat
cgcaaattaccattggatgacctcgcctctgcaaaaggtaaggatatggtagactttatt
aaagagatggaggcaatcgttttcagcggtacacgtcttaatatagattactggattaac
gacatacttgacgaagatcaacaagaggagcttcatgattactttatggaggcagagaca
gataaaatcgaagttgcaatggaagaatttgatggtgattatgaagacgaggagcttcgt
ttgtataggatcaaatttatgagtgaggtggcaaattag
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