Dokdonia sp. 4H-3-7-5: Krodi_0412
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Entry
Krodi_0412 CDS
T01484
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
kdi
Dokdonia sp. 4H-3-7-5
Pathway
kdi03030
DNA replication
kdi03430
Mismatch repair
kdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Krodi_0412
03430 Mismatch repair
Krodi_0412
03440 Homologous recombination
Krodi_0412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kdi03032
]
Krodi_0412
03400 DNA repair and recombination proteins [BR:
kdi03400
]
Krodi_0412
Enzymes [BR:
kdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Krodi_0412
DNA replication proteins [BR:
kdi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Krodi_0412
DNA repair and recombination proteins [BR:
kdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Krodi_0412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
GIY_YIG_2
RNase_H_2
DEDDh_C
DUF7508
AMG1_III
Motif
Other DBs
NCBI-ProteinID:
AEE18398
LinkDB
All DBs
Position
476418..477794
Genome browser
AA seq
458 aa
AA seq
DB search
MYAILDIETTGGKYNEEGITEIAIYKFDGHQVVDQFITLVNPERPIQAFVVGLTGINNGM
LTDAPKFHEIAKRIIEITEGCIIVAHNAQFDYRILSLEFDRLGYPYERTTLCSVELSQEL
LPGHDSYSLGKLTKTLGIAMSNRHRADGDAIATVKLFKLLLEKDPEKTIITKAIRSFPKK
HMDTKLKDLIRSVPSETGVYFMHNVNGTIIYIGKSKNMKKRLTQHFTNDNRKSKQIQDQV
ETVTYQTTGTELIALLKENAEIKRHKPKFNRALRRTKFKVQLTHYTDSEGYIHLKTERAD
GRKESITTYSNSMSAKANLERIIDSYDLCQNKTLYNEKSGNCFNYTIKKCNGACIGGESP
ESYNQRVQAFLDKHSYKNKSMIIVERGRTSIERSVVLVEDGIFVGIGYYKSDFQLNDLES
LKSIITPMEDNRDARHIIQSYCRSRKRLKIIPLDQITN
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atttacgcaatactagacatagaaaccactggcggtaagtacaacgaagaaggtattaca
gaaatcgccatttataaatttgacggacatcaagttgtagatcaatttattactctcgta
aatccagaacgccccatacaagcatttgtagtaggacttactggtattaataacgggatg
ttaacagatgctccaaagtttcatgaaatagcaaagcgtattattgaaatcacagaggga
tgtattattgtggctcataatgcccagtttgactatcgcattttaagtctagaatttgac
aggcttggatacccttatgaaagaacgaccttatgttctgtagagctttctcaagaatta
cttcccggacatgatagctatagtttaggaaaactaactaagacattaggaatcgcgatg
tctaacagacatagagcagatggtgatgctattgcaactgtcaaacttttcaagttactc
ctagagaaagacccagaaaagacaattataactaaagccatacgctctttcccaaaaaag
catatggacaccaaacttaaggaccttataagaagtgtgccttctgagactggtgtgtac
tttatgcataatgtaaatggaaccatcatttacataggcaaaagtaaaaacatgaaaaaa
cgtcttacgcagcattttactaatgataatcgtaagagtaagcaaatacaagatcaggta
gaaacggttacctaccagactacaggtactgaactcattgcacttctaaaggagaatgca
gaaataaaacgtcacaagccaaagtttaatagagccttacgtagaactaaatttaaagta
caactcactcactatacagacagtgaaggttatatacatctcaagaccgaaagagcagat
ggtcgcaaggaatctataacaacttatagcaactctatgagtgcaaaggctaatctagag
cgcattatcgactcgtatgatttatgccaaaacaagacactgtacaatgaaaagagtggc
aactgctttaattatactattaaaaaatgtaatggcgcttgtatagggggggaatcacca
gaatcatataaccagcgtgtgcaagcttttctagacaagcatagttacaaaaacaaaagt
atgataatcgttgagcgtggtcgcacctcaattgaacgttctgtagtacttgtagaagat
ggtatttttgtaggaataggttattataaatctgatttccaactcaacgaccttgaatcg
cttaaatctattataacccctatggaagataatagagatgctagacacattatccagagt
tactgtcgtagcagaaaacgacttaagattattccgctagatcagattactaactag
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