Dokdonia sp. 4H-3-7-5: Krodi_0906
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Entry
Krodi_0906 CDS
T01484
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
kdi
Dokdonia sp. 4H-3-7-5
Pathway
kdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Krodi_0906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kdi03019
]
Krodi_0906
03400 DNA repair and recombination proteins [BR:
kdi03400
]
Krodi_0906
Enzymes [BR:
kdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Krodi_0906
Messenger RNA biogenesis [BR:
kdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Krodi_0906
DNA repair and recombination proteins [BR:
kdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Krodi_0906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
HTH_24
Sigma70_r4_2
ZSWIM1-3_RNaseH-like
Helicase_Sgs1
TnsD
DUF2802
Motif
Other DBs
NCBI-ProteinID:
AEE18890
LinkDB
All DBs
Position
1037193..1039283
Genome browser
AA seq
696 aa
AA seq
DB search
MVATQELHSLLKTHFGYDNFRPNQQEIIESVCRGDDALVIMPTGGGKSMCFQLPALALDG
VALVISPLIALMKDQVDALRANGIRAAYYNSTQPLEETQQVLSDLQSGAIDLIYVAPESL
QMLDGALNAATISLIAIDEAHCISSWGHDFRPAYTQLGYLKRRFPQAPLIALTATADRST
QDDIADQLGISNAKKYVSSFDRPNLYLDVRPGQKRNDQILDFLEEHPGESGIIYCLSRKS
TESLAAKLQANGYKAAAYHAGMHAEQRSKVQEDFINDTTPIICATIAFGMGIDKSNVRWV
IHYNMPKNLEGYYQEIGRAGRDGLPAHTLLFYSYADTLQLRQFIDGAKNADYQMAKLDRM
QQYAEALSCRRKVLINYFGEFLSEDCGNCDICNSPPAYFDGTVLAQKVLSGVARMQQKEA
MGTVIDVLRGSQNAQVYDKGYQEIKTYGAAKDVPWRDLQQYIVQLINQGLLEIRFRESGR
LLLTPLAKEVLYDGKNIQLAKLTKVKTEPVTKERKPKKPKGTLFEKLRELRSELARDANV
AAYIVFSDTSLKDMEDQEPVTQKQFLDIQGVGQAKMEKYGADFIKVIKEHVQKPKPKSGS
KTYLETKKLIQQGLSLEEIAETRKLTIGSVYNHLMKLHDEGMEVDFYQFIQPVEVKQVHD
AILKVEDADKLKSFYEYFKEEMPYWKIRLALYLKGK
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggttgcaacacaagaattacactcccttttaaaaactcattttggctacgataatttc
cgccctaaccagcaagagattatagaatctgtgtgtcgtggagatgacgcacttgttatt
atgcctactggtggtggtaaatccatgtgttttcaattgcccgcacttgcgctagatgga
gttgctcttgtaatctcacctcttattgccttaatgaaagatcaggtagatgcgctacgt
gcaaacggcataagagcagcctactacaatagcacacaacctctagaagaaactcagcaa
gtattatcagatttacaaagcggcgccatagacctcatctatgttgcacctgaaagccta
caaatgttagacggagcacttaatgccgcaaccatttcattaatcgccatagatgaagca
cactgtatctcatcatggggtcacgattttagacctgcatacacgcaactaggctatcta
aaaagacgctttccacaagcaccacttattgcccttaccgcaacagcagacagatcaaca
caagatgatattgcggatcaattaggaataagcaatgcaaaaaagtacgtctcttctttt
gatagacctaacctctatctcgatgtgagacctggccaaaaacgtaatgatcagattctt
gatttccttgaagagcaccctggagaaagtggtatcatttactgtctttctagaaaaagt
acagagtctctagctgccaaactacaagctaacggttataaagcggctgcataccacgca
gggatgcacgcagagcaacgttcaaaagttcaagaagattttataaatgatacgacgccc
ataatttgtgctaccatcgcctttggtatgggaatagataagagtaacgtgcgatgggtg
atccactacaacatgcctaaaaatcttgaaggatattatcaagaaataggtcgtgctgga
cgtgatggcttacctgctcacaccttacttttttatagttatgcagacaccctacagcta
agacagtttatagacggagcaaaaaatgccgactaccaaatggcaaagctcgatcgtatg
caacagtatgcagaagcgctgagttgtagacgtaaagtgcttatcaactactttggcgag
tttctctctgaggattgcggaaactgtgacatttgtaacagtccgccggcatattttgac
ggtactgtacttgctcaaaaagtactttcgggcgttgctcgtatgcaacaaaaagaagcg
atgggtaccgtgattgacgttttaagaggttcgcaaaacgctcaagtatatgacaaaggc
tatcaagaaataaaaacttacggagccgcaaaagatgttccctggagagaccttcagcaa
tatattgtgcagcttatcaatcagggattgttagaaatacgctttcgcgaaagcggaaga
ttattactcaccccacttgctaaagaagttttatacgacggaaaaaacatacaactggct
aaactcaccaaggttaaaaccgaacctgttacgaaagaacgcaaacctaaaaaaccaaaa
ggaacgctctttgaaaagctgcgcgaactacgctcagaacttgctagagatgcaaatgtg
gctgcatatattgtattttctgatacttcccttaaggatatggaagatcaagaacctgta
actcaaaagcagtttttagacattcaaggtgtaggacaagcaaagatggaaaaatatggc
gcagattttataaaggtcattaaagagcatgtccaaaaaccaaaacctaaaagcggtagc
aaaacgtatctagagactaaaaaactcatccagcaaggcctttctctagaagaaattgca
gagacccgtaaactcactataggctctgtgtacaatcacttgatgaagttacatgatgaa
ggtatggaggtagatttttaccaatttatacagcccgtagaagtaaagcaagtacacgac
gccattttaaaggtagaagacgcagataagctcaaatctttctacgaatactttaaggaa
gagatgccatattggaaaataagacttgccttatatttaaaaggtaagtag
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