Dokdonia sp. 4H-3-7-5: Krodi_1023
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Entry
Krodi_1023 CDS
T01484
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
kdi
Dokdonia sp. 4H-3-7-5
Pathway
kdi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
kdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Krodi_1023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kdi03400
]
Krodi_1023
Enzymes [BR:
kdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Krodi_1023
DNA repair and recombination proteins [BR:
kdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Krodi_1023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
MAGSP
Motif
Other DBs
NCBI-ProteinID:
AEE19007
UniProt:
F4AZ52
LinkDB
All DBs
Position
complement(1164026..1167439)
Genome browser
AA seq
1137 aa
AA seq
DB search
MSKNELSQHFAQSLQLQKLREAISHSQENNKNIQAKGLVGSALSFTISSAFESAESPFLI
ILNDKEEAAYFLNDLEQLRKEANVLFYPGSYRRPYQIEEIDNANILLRAEVLNRINSRRK
PALLVTYPDALFEKVVTRKELDRQTLKIAVSDQLSLDFVNEMLFEYKFKRVDFVTEPGEF
SVRGGIVDVFSFSHDEPYRIEFFGDEVDSIRTFDVESQLSTGQVKKISVMPNVENKALTE
VRQSFLEYISPKTVVFIKNRSLLVDRTDKNFAKAEEAFSNLDSEIKRNSPEELFMHGAAL
QQQLDTFATVDLTSKIDGAIADTTINFEQQPQPSFNKQFDLLIANLNENSAKGYKNYIAC
VTEQAAKRFHDIFDDADAIVKQYETVVLSLYQGFIDDEQKIAIYTDHQIFERYHKFNLKN
GYAKKQSITLKELSHLSVGDYVTHIDHGIGKFGGLQKIDVEGKPQEAIKLIYGERDILYL
SIHSLHKITKYNGKDGKPPQIYKLGSQAWKKLKAKTKSRVKHVAFNLIKLYAKRRLQKGY
AFGPDTHMQHELEASFIYEDTPDQSSATEDVKRDMESERPMDRLVCGDVGFGKTEVAIRA
AFKAVDGGKQVAVLVPTTILAYQHARTFKERLKDFPVKIDYLNRFRTAKEKREVLAGLES
GAIDIVIGTHQLTSKNVNFKDLGLLVIDEEQKFGVAVKDKLKTISETVDTLTLTATPIPR
TLQFSLMAARDLSTINTAPPNRYPIESNVVRFSEEVIRDAVQYEIQRGGQVFFIHNRIEN
IKEVAGLIQRLVPDAKVGIGHGQMEGKTLEAKMLSFMNGEFDVLVSTTIIESGLDVPNAN
TIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSAMTDDARKRIQALEQFSVLGS
GFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIDELKEDEFSELYNDDPAF
AKAEKDYVKDTVIDTDFSLLFPDDYVNNITERLNLYTQLNNVKTEEQLDDFERQLVDRFG
PLPEEAEDLLDSVRIKWVATKIGLEKVVLKNGKLTGFFIADQQSAFYQSPAFGRVLKFVQ
ENAYRIGIKEKKLSKGLRLLLKSDDAKTVNDVVALLRPLMPESTKKKAAELPMDDGE
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaaacgaactctcgcaacactttgcacagtctctgcaactgcagaaactaagg
gaagctatttcccattcccaagaaaacaataaaaatattcaagcaaaaggtctcgtagga
tctgcactatcttttaccataagcagtgcttttgaatccgccgaaagtccttttctcatt
atcttaaacgataaggaagaagctgcttattttcttaatgatctagagcagctacgtaaa
gaggcaaatgtgcttttttaccctggcagctatagaagaccttaccagatagaagaaata
gacaacgcaaatatcctgctgagggcagaggttttaaacagaataaactctcgtcgcaag
ccagcattgctagttacctatccagatgcgctttttgaaaaagtagttactcgtaaagaa
ctagatagacagacgcttaaaatagcagtgagtgatcaactgtcgctggattttgtaaat
gagatgctgtttgaatataaatttaaacgtgttgattttgttacagagccgggagaattt
tcggtacgtggagggattgtagatgtattttcgttttctcatgatgagccgtatcgtatt
gagttttttggtgatgaggtagatagtataaggacgtttgatgtggagagccaactctca
actgggcaggtgaaaaagatttcggtgatgcctaatgttgagaacaaggcattaacagaa
gtacgccagagttttctagagtatatctcgcctaaaacggtagtttttataaaaaacaga
tcacttcttgtagatcgtactgataaaaatttcgcgaaagcggaagaagcattttctaac
cttgactcagagataaagcgcaactcaccagaggagctttttatgcatggagctgcatta
cagcagcagctagatacgtttgccacagtagatctcacctcaaaaatagatggtgcgata
gctgatactacaatcaattttgagcaacaaccacaaccttcttttaataagcagtttgac
ttattgattgcaaacttgaatgaaaactccgcaaagggttataagaactatattgcctgt
gtgacggagcaagcggcaaagcgttttcatgacatttttgacgatgcagatgcgattgta
aagcaatatgaaacagtggtactgtcattatatcagggatttatagatgatgagcagaag
atagcgatctatacagatcaccagatttttgagcgttatcacaagtttaatcttaagaat
gggtatgcaaaaaagcaatccattacgcttaaggaattgagccatctctccgtaggtgat
tatgtgacgcatattgatcacgggattggaaaatttggtggattacagaagattgatgta
gaagggaagccgcaagaagcaatcaaattgatctacggagagcgagatattttatacctc
agtattcactcgctacataaaattacaaagtataacggtaaagatggcaagccgccacaa
atttataaactaggtagccaggcatggaaaaagcttaaggcaaagaccaagtctagagtg
aagcacgttgcgtttaacctcattaaattatatgcaaaacgtagacttcaaaaaggctat
gcctttgggccagatacgcacatgcagcatgaattagaagctagttttatttatgaggac
acaccagatcaaagtagcgctaccgaagatgtaaagcgtgatatggaaagtgagcgtcct
atggatcgcttagtgtgtggggatgtaggttttggtaaaacagaggttgccattcgcgcc
gcgtttaaagcggttgatggtggtaagcaagttgctgtacttgtacctacaacgattcta
gcctatcaacatgcacgaacatttaaggagcgtctcaaagattttcctgtaaaaattgac
tatctcaaccgttttagaacagcaaaagaaaagcgcgaagtgctagcaggattagaaagt
ggggcaatcgatattgtgataggtacgcaccagcttacgagtaaaaatgtaaactttaaa
gacctaggacttctcgttattgatgaggaacaaaaatttggcgttgcggtaaaagataag
ctcaaaaccatctctgaaaccgtagatacactcacgcttacagcaactcctatcccaaga
acactgcagttctcactcatggcagcaagggatttaagtaccataaatacggcgccacct
aatagatatcctatagaaagtaatgtagtgcgcttctctgaggaggtgatacgagatgcg
gtgcagtatgaaatacagcgtggcggccaagtattctttatccataaccgtatcgagaat
attaaggaagttgcgggtcttattcagcgtcttgtacccgatgcaaaagtgggtataggt
cacgggcaaatggaagggaaaacacttgaagcaaagatgttatcgttcatgaacggtgag
tttgatgtactggtgtctaccactattattgagagcggacttgatgtgcctaatgcaaat
acgatttttataaataacgcaaataattttggactgtcagacctccaccagatgcgaggt
cgtgtgggacgtagcaacaagaaagcgttttgttactttattactcctccatacagtgct
atgacagatgatgctcgtaagcgcatccaggcgctggagcaattttctgttttaggtagt
ggtttcaacatcgccatgaaggatcttgagatacgtggtgctggagatttattaggagga
gaacagagcggattcatcaatgagatagggtttgatacatatcaaaaaatcctaaatgaa
gccattgatgagcttaaggaagatgaattttcagagttgtataatgatgatcccgctttc
gcgaaagcagaaaaagattatgtaaaagacacagtgattgatactgactttagtcttcta
tttccagatgactacgtcaacaatatcactgaacgcttaaacttatacacacagctcaat
aatgtaaaaacagaggagcaactagacgattttgaacgccaactcgtagaccgttttgga
ccattaccagaagaagctgaagatttattggattctgtgcgtatcaagtgggtagcgact
aaaataggccttgagaaagtggttctcaaaaatggaaaactcaccggctttttcattgca
gaccagcagagtgctttctatcaaagtccagcatttggtcgtgttcttaagtttgtacaa
gaaaacgcatatcgcatagggataaaagagaaaaagctatctaaaggattgcgattactc
ctaaaatctgacgatgctaagacagtgaatgatgtggtagcattactacgaccattaatg
ccagaaagcaccaagaaaaaagcagcagagctgcctatggatgatggcgagtaa
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