Dokdonia sp. 4H-3-7-5: Krodi_1262
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Entry
Krodi_1262 CDS
T01484
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
kdi
Dokdonia sp. 4H-3-7-5
Brite
KEGG Orthology (KO) [BR:
kdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
kdi03016
]
Krodi_1262
Enzymes [BR:
kdi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Krodi_1262
Transfer RNA biogenesis [BR:
kdi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Krodi_1262
Prokaryotic type
Krodi_1262
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
AEE19245
UniProt:
F4B107
LinkDB
All DBs
Position
1430330..1431037
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AA seq
235 aa
AA seq
DB search
MLTDQDYKDGQVLIFDKPLEWTSFQLVNKVRWLIRKNLNIKKIKVGHAGTLDPLATGLMI
ICTGKFTKRLHEFVGQEKEYTGTIVLGGTTPSYDLETEVDQTFSTEHITDEDIYAFAKAY
QGNIMQRPPVFSALKKEGKRLYEFARAGEEVDISKREINISSFEITRIAMPEVDFKVRCS
KGTYIRSLAFDFGEGLKSGAHLSALRRTKIGNYNVDDAQSLDGFIAEITAASTEE
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgcttacagatcaagattataaagatgggcaagtactcatttttgacaaaccgctagag
tggacctcattccagctggttaacaaagtgcgctggcttatacgtaagaatcttaatata
aagaagataaaagtaggccatgcaggtacgttagatcctttggcaactggccttatgatt
atttgtacgggtaagtttacaaagcgcttacacgagttcgttgggcaagaaaaggaatat
acgggcaccattgttttaggtggtactacgcctagttatgatcttgagacagaagtagat
caaactttttctacagaacatattactgatgaggatatttacgctttcgcgaaagcgtac
caaggaaacatcatgcaacgcccacctgtattttctgcactcaaaaaggagggcaaacgc
ttgtatgaatttgcacgagcaggagaagaagtagatatttctaaacgtgagattaatatc
tcatcttttgaaatcactcgcattgcaatgccagaagtagattttaaagtgcgctgtagt
aaaggaacatatattagatcgctagcatttgattttggcgaaggactcaaaagtggagct
catttgagtgcattgagaagaaccaaaataggtaattacaacgtagatgatgcacagtct
cttgatggatttatagccgaaattacagctgcatccacagaagaataa
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