Dokdonia sp. 4H-3-7-5: Krodi_2224
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Entry
Krodi_2224 CDS
T01484
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
kdi
Dokdonia sp. 4H-3-7-5
Pathway
kdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Krodi_2224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kdi03021
]
Krodi_2224
03019 Messenger RNA biogenesis [BR:
kdi03019
]
Krodi_2224
Transcription machinery [BR:
kdi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Krodi_2224
Messenger RNA biogenesis [BR:
kdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Krodi_2224
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
Spore_III_AA
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
AEE20205
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All DBs
Position
2513226..2514989
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AA seq
587 aa
AA seq
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MFDISELKAKKLPELQEIAKGINVPKYRTLKKLDLVYRILDLQAADPKKIEAVVPKVKEA
TPKAAAPKSERKPREERKPRTPRPAKTAKDNKDAPVTNTEEAKDAPAKGKPPVKKEAPAK
REPQAKREAVKREPAKGKGGDDTKTPQKRDNQKDTRNNDKRSSNDNRQGNDKRAPRDNNR
NSNSRNNTPRNNRNQKDGNSHGNKDNRNRYREPDYEFEGIIESEGVLDIMQDGYGFLRSS
DYNYLASPDDIYVSQSQIRLFGLKTGDTVLGVIRPPKEGEKYFPLIKVSKINGLNPNIVR
DRVSFEHLTPLFPTEKFNLANRQASISTRVMDMFAPIGKGQRGMIVSQPKTGKTMLLKDV
ANAIAANHPEVYQIVLLIDERPEEVTDMQRNVNGEVVASTFDKEAHEHVKVANIVLEKAK
RLVECGHDVVILLDSITRLARAYNTVQPASGKILSGGVDANALHKPKRFFGAARNIEGGG
SLTILATALTDTGSKMDEVIFEEFKGTGNMELQLDRNIANRRIFPAIDLTSSSTRRDDLL
HSKDTTQRLWVLRKYLADMNPVEAMEFMSDRIKSTKNNEEFLISMNQ
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatatttcagaattaaaagcaaagaagcttcccgagcttcaagagattgcaaaa
gggattaatgttcctaaatacagaacattaaaaaagctagaccttgtttacagaatactt
gatttacaagcggccgatccaaaaaaaatagaggcagtagtgcctaaagtaaaagaagca
acacctaaagcggcagcccctaagtcagaacgtaagcctagagaagagcgtaaacctcgt
actcctcgaccagcaaaaactgcaaaagataataaggatgctcctgtaacaaacactgag
gaggctaaagatgctccggcaaaaggaaaacctcctgtaaaaaaggaagctcctgcaaaa
agagaacctcaagcaaaaagagaagcggtaaaacgtgagccagcaaagggtaaaggtgga
gacgataccaagacaccacaaaaacgagataatcaaaaagatactcgtaacaacgataaa
cgatcaagcaatgacaaccgtcaaggcaatgataagcgtgcgccacgcgataataatcgt
aattcaaattctcgtaataacacgccacgtaataaccgtaatcaaaaagacggaaattca
catggaaataaagacaatcgaaatcgctaccgcgagccagattatgaatttgaaggaatt
atagagagtgaaggagtattagatattatgcaagatggctatggctttttgcgcagttct
gactacaattaccttgcatctccagatgatatttatgtatcacaatcacagataagactt
tttggccttaaaactggtgatactgtattaggagtaatacgccctccaaaagaaggagag
aagtatttcccacttattaaagtaagtaagattaatggtcttaaccctaacatcgttagg
gatcgtgtttcttttgagcacttgacaccattatttcctacagaaaaatttaacctagca
aatcgtcaagcgagtatatcaactcgtgtgatggatatgtttgcacccataggaaaagga
caacgtggtatgattgtatcacaacctaaaacgggtaaaacaatgttacttaaggatgtg
gcaaatgctattgcggcaaaccatcctgaagtataccaaattgtacttcttatagatgaa
cgtccagaagaagttacagacatgcagcgtaacgtaaatggagaagtagtagcttctaca
tttgataaagaagcccatgagcacgtaaaagtggcaaacattgttcttgaaaaagcaaaa
cgtcttgtagagtgtggtcacgatgtagtaatacttcttgactctatcacacgtctcgca
cgtgcatataacaccgtacagccagcatctggaaagattctttccggaggtgtagatgca
aatgcattacacaagcctaagcgtttctttggagcagctcgtaacatagaaggaggtgga
tcacttaccattcttgctacagcactcacagataccggttcaaaaatggacgaagtaatc
tttgaggaattcaagggtacaggtaacatggagctacaactggatcgtaacatcgcaaac
cgccgtattttcccagcgatcgatcttacatcttcatctacacgtcgtgatgacttattg
cacagtaaagacaccacgcagcgtctatgggtattacgtaaataccttgcagatatgaac
ccagtagaagcgatggagtttatgagtgatcgtatcaagagcacaaaaaataacgaggaa
ttcttgatctcaatgaatcaataa
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