Dokdonia sp. 4H-3-7-5: Krodi_2591
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Entry
Krodi_2591 CDS
T01484
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
kdi
Dokdonia sp. 4H-3-7-5
Pathway
kdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Krodi_2591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kdi03019
]
Krodi_2591
03009 Ribosome biogenesis [BR:
kdi03009
]
Krodi_2591
Enzymes [BR:
kdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Krodi_2591
Messenger RNA biogenesis [BR:
kdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Krodi_2591
Ribosome biogenesis [BR:
kdi03009
]
Prokaryotic type
rRNA helicases
Krodi_2591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEE20567
LinkDB
All DBs
Position
complement(2924292..2926226)
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AA seq
644 aa
AA seq
DB search
MTFDELGLNAPLLQAIADMGFETPSKIQEEAIPQLLAEDRDMVALAQTGTGKTAAFGFPL
LQNIDENSKTTQGLIIAPTRELCLQITNEMKLYSKHMKGVRVVAVYGGANIQEQAREISR
GAQIVVATPGRMQDMMRRRMVDITKLSYCVLDEADEMLNMGFYEDITNILADTPEDKLTW
LFSATMPREVSRIAKEFMVNPLEITVGHKNEGAKNVSHEYFVVHTRDRYQALKRLSDANP
DIFSVIFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNRQIQMLVATDV
AARGIDVDDITHVVNYQLPDEIETYTHRSGRTGRAGKTGTSLVIVTKSEMRKIKQLEKIL
GKKFEQKTIPDGKEITQVQLFHLANSINTTEINNEIDAYLPEIEEVLKDNTKEELIKKVF
SVEFTRFFNYYKKSKDLNQNAVGAAKEQSGDSTRYFINVGSKDDFDWMKLKDFLKEELGL
GQDGVYRVDCKDAFSFFNTDTEHKDKILSHFENFELDGRRVSVEETQGGGGRSSGGGRSG
GGDRRRGGGGRSGGGDRRRGGDDGFRSSGRSGGGDRRRSGGGSSDRKRSDRKSSYGDDQG
GRSRSRSERPARSERSERSSSPRTPDNRSEGNKSPFSGKRRRRS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgatgaactaggcctaaatgcgcctttactccaggctattgccgatatggga
tttgaaaccccatcaaaaattcaagaagaagctatcccacaattactcgcagaagaccgc
gatatggttgctcttgcacaaacaggaacaggaaaaacagctgcatttggatttccatta
ttacaaaatatagatgaaaatagtaagactactcaaggtcttattatagctcctactcgc
gaactatgtctccagattacaaacgagatgaaactgtattcaaagcacatgaaaggtgtg
cgtgttgttgcagtttatggaggagcaaacatacaagagcaagctcgtgagatttctcgc
ggagcacaaattgtagtagctacaccaggacgtatgcaagatatgatgcgtcgtcgtatg
gtagatattacaaaattaagctactgtgttcttgatgaagcagatgagatgcttaacatg
ggattctatgaggatatcacaaatattcttgcagatactccagaagataagcttacatgg
ttatttagtgctacaatgcctagagaagtatcacgtatagcaaaagaatttatggtaaac
ccgttagaaataacggtaggacataaaaatgaaggtgcaaagaacgtatctcatgagtac
tttgtagtacacactagagatcgttaccaagcacttaaaagactttctgatgcaaatcca
gatatcttctctgtaatcttttgtcgtactaaacgcgatacacaaaaagttgccgagcaa
cttattgaagatggatacaacgcaggagcattacacggagatttaagtcagaaccagcgt
gacctggtaatgaagagctttagaaaccgtcagatacaaatgcttgttgcaacagatgtt
gctgcacgtggtattgacgtagatgatattacacacgtagtaaactaccaattacctgac
gagatagaaacctatacacaccgttctggtcgtactggtcgtgctggtaaaacaggtact
tctctggtgattgttactaaaagtgaaatgcgtaaaatcaaacaacttgagaaaatctta
ggtaagaagtttgaacaaaaaaccattccagacggaaaggaaatcacgcaagtacagtta
tttcaccttgcaaatagcattaacacaacagagattaataacgagattgatgcttatctt
ccagaaatagaagaagtattaaaagataatacgaaagaagagcttattaaaaaagtattt
tctgtagagttcacacgtttctttaattattataagaaatcaaaagaccttaatcaaaat
gcagttggagcagctaaggagcaatctggagactctacacgttactttataaatgtaggt
agcaaagatgattttgactggatgaaacttaaagacttcttgaaggaagaattaggatta
ggtcaagatggtgtataccgcgtagactgtaaagatgccttttcattctttaacacagat
actgagcacaaagataaaatcttatctcactttgaaaactttgagctagatggtcgtcgc
gtgagcgttgaggaaactcaaggcggcggtggtcgcagtagtggcggaggtcgtagcggt
ggcggagatcgtcgtcgtggtggcggaggtcgcagcggtggtggtgatcgtcgtagaggt
ggtgatgatggatttagatctagtggtcgcagcggtggcggagatcgtcgtcgtagtggc
ggaggatcttcagatagaaaacgcagcgatcgcaaatcaagctatggagatgaccaaggt
ggtcgctctagaagtagatcagaaaggccagcaaggtctgagagatcagaacgcagttct
tctccacgcacgccagataacaggtctgaaggaaacaagagcccattttctggcaaaaga
cgtcgcagaagctag
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