Dokdonia sp. 4H-3-7-5: Krodi_2963
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Entry
Krodi_2963 CDS
T01484
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kdi
Dokdonia sp. 4H-3-7-5
Pathway
kdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Krodi_2963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kdi03019
]
Krodi_2963
Enzymes [BR:
kdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Krodi_2963
Messenger RNA biogenesis [BR:
kdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Krodi_2963
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
Fe-ADH
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
AEE20937
LinkDB
All DBs
Position
complement(3356660..3357943)
Genome browser
AA seq
427 aa
AA seq
DB search
MSFKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMI
HRLINNPKQGRRKIRALVLTPTRELAAQIQENVLEYSKYVDIKSMVIFGGVNQNPQVRTL
RQGVDILVATPGRLLDLQNQGLLSLSDVEFLVLDEADRMLDMGFIHDIKKVLKMVPAKRQ
NLLFSATFNTDIKKFASSILTNPVLVEATPENTTAEKVDQKSYRVDKSRKTEMLIKFIRE
GNWDQVLVFTRTKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKVRVLVAT
DIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDYVRGIEK
LLGEKLHSEVLEGFQPTDTLAQIKKEAAENKARHQQGRRNSGNSGGRGKSAGGSKSSDSR
NKNSRRR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaatctttagggctctctgatgccctgctcaaagctgtgagcgaaaaaggc
tatacaacgccatcacctattcaacaaaaagcaattccagtagtacttcaaggcaaagat
gttcttgcaagtgcacaaaccggaacaggaaaaactgcaggattcacactgcctatgatc
cataggcttataaataacccaaaacaaggacgccgtaagataagagcactagtgcttaca
cctacaagagagcttgctgctcaaatacaagagaatgtattagagtacagtaagtacgta
gatataaaatctatggtcatctttggtggggtaaaccagaacccacaagtacgcacctta
cgtcaaggagtagatattctagttgccactcctggtagactattagatttacaaaatcaa
ggtttattgagcctttctgatgtagagtttttagtacttgatgaagcagaccgtatgctt
gatatgggctttatacatgatataaagaaagtattaaaaatggttccggcgaaaaggcag
aacctcctttttagtgcaacgtttaatacagatattaagaagtttgcaagtagcattctt
actaatcctgtattagtagaagcaacaccagaaaacactactgcagagaaagtagatcaa
aaatcgtatagagtagataagtctcgtaaaacagaaatgcttatcaaatttataagagaa
ggaaactgggatcaagtgctggtgttcacaagaactaagcacggtgcaaacagactttct
caaaaattagagaaagacggaatctcatctgcagcaatacacggtaataaaacacaaaac
gcaagagtaaaagcacttgctggttttaagagtggaaaagttcgcgtacttgtagcaaca
gacattgctgctcgtggacttgatatcccattattaccttatgtgattaactatgagctt
cctaatgtgccagaagattatgtacaccgtataggtcgtactggtagggcaggagcaagt
ggtcaagcaatatcactagtaggagtggatgaggtagattatgtaagagggatagaaaag
ctattaggagaaaagctacatagcgaagtattagaaggttttcagccaacagatacgcta
gcgcagatcaaaaaagaagctgccgaaaataaagcaagacaccagcaaggtcgtcgtaac
tctggtaacagtggaggacgagggaaaagtgctggaggaagtaaaagttctgatagtaga
aacaaaaactcaagaagacgttaa
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