Dokdonia sp. 4H-3-7-5: Krodi_2969
Help
Entry
Krodi_2969 CDS
T01484
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
kdi
Dokdonia sp. 4H-3-7-5
Pathway
kdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Krodi_2969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kdi03019
]
Krodi_2969
Enzymes [BR:
kdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Krodi_2969
Messenger RNA biogenesis [BR:
kdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Krodi_2969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Gp-FAR-1
Motif
Other DBs
NCBI-ProteinID:
AEE20943
UniProt:
F4AX61
LinkDB
All DBs
Position
complement(3362321..3363679)
Genome browser
AA seq
452 aa
AA seq
DB search
MTFKDLNLDKFLWNALDDMGFTQPTPIQVDALAPVMSGGDVVGIAQTGTGKTYAYLLPIL
RTLPYSRQENPRVLILVPTRELVLQVVSELEKLTTYIDVRVAGVYGGANINTQKALIAQG
QDIVVATPGRLYDLAVSRVLQLKSIQKVVIDEVDVMLDLGFRPQLMNIFDILPKRRQHIM
FSATMTEDVDALIKDFFSTPQFIRVAKSGTPLENITQIGYKMPNFYTKVNFLLEELAFSK
KYPKTLLFVRDKRMADRLYLKLEEAFPGDVDLIHSNKTQNYRINSINAFAKGKVRMMVAT
DVMARGLDIDDITHVININTPRFPENYLHRIGRTGRAQKEGVSIVLSTPEEDEYLAEIEA
LMGVKVAIQPLPEDVAISKELTPEERPEAKEIFNPHRWNKNDDDAPGPAFHDKSEKNSKV
NLGGAYRREIAQKYKKPKTRGDKNYNKRNKRK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgacttttaaagacctcaatctcgataaatttttgtggaatgccctagacgatatggga
ttcactcaacctactcctatacaggtggatgcactcgctccagttatgtctggtggagat
gtggttgggattgcacaaactggtacgggtaaaacctacgcgtatttacttcctatactt
agaacactaccatattctcgccaagagaatccgcgtgtgcttatccttgtccctacaaga
gaattagtgctgcaagtggtaagtgagttagaaaagcttacaacgtacatagatgtgcgc
gtggctggtgtatatggaggagcaaatattaatactcaaaaagcacttattgctcaaggg
caagatattgtggttgctactccaggaaggctttatgaccttgcggtgagtagagtatta
caactcaagagtatccagaaagtggtgattgatgaggtagatgtgatgcttgatctaggt
tttagaccgcagctcatgaatatttttgatattctacctaagcgtcgccagcatatcatg
tttagtgcaacgatgacagaagatgtggatgcacttataaaagatttctttagcacacct
caatttattagggttgcaaaaagtggtacaccgctagaaaatatcacgcagataggttat
aaaatgcctaacttttatacaaaggtaaatttccttttagaagaacttgctttctcaaag
aagtacccaaaaactctattatttgtgcgtgataaacgcatggcagacagactttattta
aaattagaagaagcatttccgggtgatgtagatcttatacactcaaataaaacgcaaaac
taccgtatcaatagtatcaatgcatttgcaaaagggaaggtacgtatgatggtagctaca
gatgtaatggcacgtggtcttgatatagatgatattacacatgtaatcaacattaacact
ccacgttttccagaaaattacctgcacagaataggtcgtacaggtcgtgctcaaaaagaa
ggagtttctattgtgttaagtactccagaagaggatgaatatctagcagaaatcgaagca
ttaatgggagtaaaggttgctattcaaccgctgccagaagatgttgcgatttctaaggaa
cttactccagaggaacgcccagaagcaaaagaaatttttaatccgcatcgatggaataaa
aatgatgacgatgctccggggccagcttttcatgataaaagtgaaaagaactctaaggtc
aatttaggtggtgcttatagaagggaaatagcccaaaaatataagaaacctaagactagg
ggagataagaactacaacaaaagaaataaacgtaaataa
DBGET
integrated database retrieval system
