KEGG   Kwoniella dejecticola: 28970105
Entry
28970105          CDS       T10965                                 
Symbol
I303_107005
Name
(RefSeq) uncharacterized protein
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
kdj  Kwoniella dejecticola
Pathway
kdj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:kdj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    28970105 (I303_107005)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kdj03019]
    28970105 (I303_107005)
Enzymes [BR:kdj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     28970105 (I303_107005)
Messenger RNA biogenesis [BR:kdj03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     28970105 (I303_107005)
  mRNA degradation factors
   3'-5' decay
    Ski complex
     28970105 (I303_107005)
SSDB
Motif
Pfam: DSHCT DEAD Ski2_N MTR4_beta-barrel MTR4-like_stalk ResIII Helicase_C DEXQc_Suv3 HTH_Tnp_ISL3 Eapp_C
Other DBs
NCBI-GeneID: 28970105
NCBI-ProteinID: XP_065825562
UniProt: A0AAJ8KV28
LinkDB
Position
9:join(141857..142080,142193..142545,142642..142841,142910..143005,143065..143097,143154..143299,143360..143492,143569..143673,143746..143852,143909..144516,144578..144673,144732..144799,144867..145229,145340..145525,145630..145759,145848..145978,146043..146270,146340..146807,147017..147185,147281..147300,147408..147416)
AA seq 1290 aa
MSNEQDELLAHEAFLELLDTAVNPTSSSSLSSDELASALGIDKPLNKEDALNLLEKEVLA
PVHDLSGPELWRWQVQPPVELPIPPLTLRPLHQTHTVTPSYRGMDGTFTHWREGLAPKPP
AHPALSSSTTRAPGSLQNFVRGKGSYAPFLPGGLEAAATPQEDENEEAEEQEEEEGWKTR
APGLRRGIQLEGADEFLAEMLGQASIAPKAKRRRREGEFESQLTISRLGDDEAEEIEETS
TNGHAGPSTKNVDDLLPIGRLPAPPPPRRQFKAAVHKEWAHVVDVNQTLSNFKELVPEMA
REYPFELDNFQKEAVYRLEMGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAVYTSPIKA
LSNQKFRDFKTTFEPSTVGILTGDVQINAEGSCLIMTTEILRSMLYKGADLIRDVEFVIF
DEVHYVNDAERGVVWEEVIIMLPEHVNIILLSATVPNTKEFADWVGRTKKKDIYVISTPM
RPVPLEHFLWAGKDIHKIVDSKSRFLGDGYKAAQEATRRKQDKEREANGLPPVQRTGGRG
GAPTKARDLPTGKNAPFTKTGAGRTHANRAGGNGAPAPAVSRGGGGGGGGGRGRGGFGGR
ASHQLDQNIWTHLINYLKKNKLLPVVNFVFSKKRCEEYAQTLGAMDLNSAKEKSEVHLTW
ERALTRLKGSDKTLPQILRMRDLLSRGIGVHHGGLLPLVKEVVELLFSRGLVKVLFATET
FAMGVNMPAKCVVFSGIRKHDGTSFRNLLPGEYTQMAGRAGRRGLDTTGTVILLSGEELP
TVTELNEMMLGIPNRLSSQFRLTFNMILNLLRVEALKVEEMIKRSFSENATQKMAPEQQR
QIAHAEKQLARLPDVECSTCKNDIDAFYQNSSEIVRVNQSIFKQASYAQNAGKIFVPGRV
VILRNGHLPGNLAILLRSATSLITDGVKSDAKAWRMLVLVTPGQRSRKEDVKEIDVPPRY
PPILPKGSFPNPQWEIATYDTTSLSFVVNRILKIDHSGIIDKSSKDARDKALHDLTILHE
ELSSLPDLPEVDWSRIRAVEFVDAIRQRAILDDRLAKLTCQTCPDFHDHYAILHERKIVE
QSLTSLKLALSDQNLELLPDYESRVQALKSLSFIDENSTVLLKGRVACEINSAPELILTE
LILENILNDYEPEEVVALLSIFVFVEKSDSQPVIPDKIAQGLEVIYKIADSVERAQDKCS
VQYDQFDEKYKVGLVEVVYEWARGMPFNQITELTDVPEGTIVRVITRLDETCREVRDAAR
VIGDADLFQKMEAAQALIKRDIVFAASLYL
NT seq 3873 nt   +upstreamnt  +downstreamnt
atgagtaacgaacaagatgagctactggctcacgaagcgttcctcgagctcctcgataca
gctgtcaatccgacttcaagctcatcgctttcaagcgacgaattggcctctgcattaggt
attgataagccgctaaacaaggaagatgcgctcaatctcctagagaaggaggtattggct
cccgtacatgatttgagtggaccagaactgtggaggtggcaagtgcaacctccagtagaa
ttaccgataccgcctctaacgttgagacccctacatcagactcataccgtcacgccctcg
tatagaggaatggacgggactttcactcattggcgagaaggtctggcacctaaaccccct
gcacatcccgcattatcctcttcgaccacacgagcccctggctcgctgcagaatttcgtc
aggggaaaaggaagttacgcaccgttcctacccggtggccttgaagctgctgccacgccc
caagaggatgagaatgaagaagctgaagagcaggaggaagaagaaggttggaagactcga
gcaccaggtttgaggagaggcatacaattggaaggagccgatgagttcttagctgagatg
ctgggtcaagcctcgatagcgccgaaagctaaacgcaggcggcgagaaggagaatttgag
tcgcaattgacgatatctcgattaggcgatgatgaagcagaggagatagaagagacaagt
acaaatggacatgctggaccgagcacgaagaatgtggatgacctattgcctattggacgt
ctacctgctccaccaccaccgcgaagacaatttaaagctgccgtgcataaggaatgggct
catgtcgttgacgtgaaccagacactgtccaatttcaaggagcttgtaccggagatggct
cgagaatatccctttgagctggacaatttccaaaaggaagcggtctacaggctggaaatg
ggagacagtgtcttcgtggccgcacacacgtcggctggtaaaacggtggtagcagagtat
gccatcgctttagcagcgaagcatatgaccaaagcggtatacacttcacctataaaggcg
ctttcgaatcagaaattccgagatttcaagacaaccttcgaaccttcgactgtcggtatc
ctgacgggtgatgtgcagatcaatgcggaaggtagctgcctgatcatgacgaccgagatc
ttgcgaagtatgctgtacaagggtgccgatctaataagggatgtggaatttgtaatcttc
gatgaggttcactatgtcaatgatgctgaacgaggtgtcgtgtgggaagaagtcatcatc
atgcttcctgaacacgtgaacatcattttactctcggcgacggtaccaaatacgaaggaa
ttcgcggactgggtcggacgtacgaagaagaaagacatctacgtgatttccactcctatg
cggcccgtacctttagaacacttcttgtgggcaggcaaagatatacataagatcgtcgat
agcaaatcgcgtttcctgggcgacggatacaaagccgctcaagaagctaccaggcgcaaa
caagacaaagagcgagaagcgaacggcttaccccctgtccagcgtactggcgggcgagga
ggggcgcccacaaaggctcgggacctaccaaccgggaaaaacgctccattcacgaagact
ggtgcgggtcgaacgcatgctaatcgtgccggaggcaatggagcacctgctccagccgtc
tctcgtggaggtggaggtggcggcggcggcggacgaggaagaggtggatttggtggaaga
gcgagtcatcagcttgatcagaatatttggacgcacctcatcaattaccttaagaagaat
aagcttttaccagtggtcaatttcgtgttcagtaaaaagaggtgtgaggagtatgcgcag
actcttggagctatggatttgaatagtgcgaaagagaagagtgaggtacatctgacctgg
gaaagagctttgactaggttgaaaggaagcgataagacactgccgcagattctgagaatg
cgggacttgttgagtaggggtattggtgtgcatcatggtggactgttacctctagtcaag
gaggtcgttgaattgctcttctctcgaggtctggtcaaagtcctcttcgctactgagacc
ttcgccatgggagtcaacatgcctgcgaaatgtgtggtattttccggaatccgaaaacac
gacggaacatccttccgaaacctcttacctggagaatacacccaaatggccggaagagca
ggtcgaagaggtctcgatactactggaacagtcatcttactcagcggagaagaattacct
acagtgacggaattgaacgagatgatgctgggtatcccgaacagactgtcgtctcagttc
agactcacttttaacatgattttaaacttgctcagagtggaggcgttgaaggtcgaagaa
atgatcaagaggagtttctcggagaatgctacgcagaagatggcgcccgaacaacagaga
cagattgcccatgccgaaaaacaacttgctcgattacccgacgtcgaatgttcgacatgt
aaaaacgacattgacgcattctaccagaactcgtctgagattgtccgagtcaaccagagt
atattcaaacaagcctcgtatgcacagaacgcaggcaagatcttcgtccctggacgagtc
gtgattctgcgcaatggacatctacccggtaatcttgcaatactgctacgaagcgctact
agcttgatcacggatggggtcaaatcggatgcaaaggcttggaggatgttggtcctcgtc
acaccagggcaaagatcaaggaaagaggacgtcaaggagattgatgttccaccgcgatac
ccgccgattctgcctaaaggatcgttcccgaaccctcaatgggagatcgccacttatgat
acgacgagtctgtctttcgtcgtcaaccgaattctgaaaatcgaccactctggcataatc
gataaaagcagtaaagatgcgagagacaaggctttacatgatctgactatcctgcacgag
gagctctcgtcattgcccgatctacctgaggtggattggtcccgaattcgagcagtggaa
ttcgtcgatgctatcagacaacgagccatactggacgataggttggcgaaacttacttgt
cagacttgtccagatttccatgatcactatgcgatattacacgagcggaaaatcgtcgaa
caatccttgacttcactcaaattagcgctctccgaccagaatctagaactgttaccagat
tacgaatcgcgagtccaggcactcaagagtctcagtttcatcgatgaaaattcgactgtc
ctcctcaaaggccgagtggcgtgcgaaatcaacagtgcgccagagttgattttgacggaa
ttgatccttgagaatatcttgaatgattatgaacctgaagaagtggttgcgctgctttcg
atattcgtatttgtggagaagtcggatagccagcctgtgatccccgataagattgctcag
ggcttagaagtgatttataagattgcggatagtgtggaaagggcgcaagataagtgcagt
gtacagtacgatcagttcgatgagaagtataaagtggggttggtagaggttgtttatgag
tgggcgagggggatgcccttcaatcaaatcaccgaactcaccgacgtacccgaaggcacg
atcgtacgagtcatcactcgtctagatgagacgtgtcgagaagtccgggacgcagcgagg
gtcattggagatgcggatttgttccagaagatggaagctgctcaagcgctgatcaagagg
gatatcgtcttcgccgctagtttgtatctgtaa

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