Kwoniella dejecticola: 28971090
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Entry
28971090 CDS
T10965
Symbol
I303_108282
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
kdj Kwoniella dejecticola
Pathway
kdj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kdj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
28971090 (I303_108282)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kdj03019
]
28971090 (I303_108282)
03041 Spliceosome [BR:
kdj03041
]
28971090 (I303_108282)
Messenger RNA biogenesis [BR:
kdj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
28971090 (I303_108282)
Spliceosome [BR:
kdj03041
]
Complex B
Other components
Prp19-related factors
28971090 (I303_108282)
Complex C
28971090 (I303_108282)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_2
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
28971090
NCBI-ProteinID:
XP_018260471
UniProt:
A0A1A5ZXU6
LinkDB
All DBs
Position
11:join(417451..418239,418309..419447,419506..419587,419647..419847,419908..420424,420487..420836)
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AA seq
1025 aa
AA seq
DB search
MAVESSPIASLTSRFPLTFPIPTPLTHSHLISAADLATEEDLLHNPDNLRSWLSYIHQLK
ERIANNEPPKADTLSPEEILLGPLSTHVAREGLQQLTMVYERALAIFPTSFKLWRSYYQT
RQSYVLGQLTSSAKTARNHHAKRGSGFKTNVRELLEAAEEANEWEGGLDGIVGYEEWRSL
IATGERMIACLSHLPAPWLLHLSVLFHPKCPPTFKRTYARRTFDRALRTLPPSLHGRVWG
LYLRWAEMIGGEAGERVWRRFLKVDASLTERHITYLLDSSPPRPLAASKYLLSLARRAAK
NLYSSLEGKSPYQLFVDFLELVEKYADEVGMDEEQTLELKSNRQAIEEEISAPQEEAAPA
EEPASIHGRLIRIAGPPVPIEQGKMYKPKDAVSKKGPEDLPYDEDTDPANSRLLDVEGIV
ERDGLEIYKDQAGRLWTGLATYWIKRGEFERASATFERGLAAVVTIRDFTQIFDAYAEFS
ETTISTLMDALADEENLEDEDFDAEETEKELDERMKKFEELMDRRPFILNEVLLRRNPNE
VVEWEKRVALFGDDDEKVVETYVKALDTINPRKATGPLYPLYVNFAKFYEEGGSKDESGE
PKNEPDLKQARKIMERATKVPFKSVDELAEVWCEWAELELRNENYDEAIRLMQRATTIPR
DPKKVNFYDESLSPQQRLFKSLKIWSFYSDLEESIGSVESTKAVYDKIMELKIANAQVIV
NYAGFLEENKYFEESFKVYERGIELFHPSVAFEIWNIYLSKFVKRYGGKKLERARDLFEQ
ALENCPPKFCKPIYLLYAKLEEEHGLAKRAMGIYDRACTTVQDSDKFDMFTIYIAKATGN
FGLPATRPIYERALESLPDKQTAEMCKRFARMERKLGEIDRARAIYAHASQFCDPRVEGD
FWNEWNQFEVDTGSEDTFREMLRIKRAVQAAFNTETSFIAAQTAAAAKGAEKPTDTSAQD
AADPMAAMERDLPASTAAAKKTGGPAFVASTLKTQNAHGIDQAEDGADGEAVANPDAIEM
DEDDF
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgagtcatcccccatcgcctctttgacttccaggtttcctttaacctttcct
attcctactcctctcactcactcgcatctcatctcagcagccgacctagcgacagaggaa
gacctcctgcacaatccagacaacctccgatcatggctctcttacatccatcaactgaaa
gagcgcatagccaacaatgagccgcctaaagcagatacgctctcaccggaagagatctta
ctgggccctttgtcgacacacgtagctagggagggtttacaacagctgacaatggtctac
gaacgggcattggcgatcttccccacgagcttcaaactgtggagatcgtattaccagacg
cgtcagtcgtatgtccttggacagctgactagctccgccaagacagctaggaaccaccat
gcgaaaagaggatcaggctttaaaaccaatgttcgagaattgctagaagctgccgaggag
gcgaatgaatgggaaggtggattagatgggatcgtaggatacgaagagtggagatcgctc
atagccaccggagaaaggatgatagcctgcttaagtcatctgccagccccatggctttta
cacctttctgtgctcttccacccgaaatgcccacctaccttcaagaggacgtacgccagg
aggacgtttgacagagcattgagaaccttgccgccgagtttgcatgggagagtgtggggt
ctgtacctcagatgggcggagatgataggtggagaagctggtgagagagtctggcgacgg
tttttgaaggtcgacgcaagcttgaccgaacgacacatcacataccttctcgactcttca
cctcctcgaccgctcgcagcgtcgaaataccttctatcccttgcccgccgtgccgcgaag
aacctgtactcgtcacttgaaggcaaatcgccatatcagctatttgtcgacttcttggaa
ctggtcgaaaagtacgcggacgaagtgggtatggatgaagaacagactctagaactgaaa
tctaatcgacaagctatcgaggaggaaatctctgcaccgcaggaggaagctgcccctgcc
gaagaaccagctagtatacatggtcgactcatcaggatagctggaccgcctgtcccaatt
gaacaaggcaagatgtataagcccaaagatgcggtctcaaagaaaggaccagaagaccta
ccttacgacgaagatacggatcccgccaattctcgccttttagatgtagaaggaatagtg
gagagagacggtctagaaatatacaaagatcaagctggtaggctatggacggggctagct
acttattggatcaagcgaggcgaattcgaaagagcgtcagcaacctttgaaagaggttta
gcggctgtagtgactatcagggatttcacccagatattcgacgcctatgcggaattttcg
gaaacaacgatatccactttaatggatgctctagcagatgaagagaatttggaggatgaa
gatttcgatgcggaagagactgagaaggagctggatgagcggatgaagaagtttgaagag
ttgatggatcgtcggccgttcatcctgaacgaggtcttgctcaggaggaatccgaacgaa
gtggtagaatgggagaagcgggtggcattgttcggggatgacgatgagaaagtcgtggag
acgtatgtgaaggctctggatactataaacccacggaaagcgacgggacccttatacccg
ctttacgtgaacttcgcgaagttttacgaggaaggaggaagcaaagatgagagtggagaa
ccgaagaatgagccggacttgaagcaggccaggaagatcatggaacgtgcgacgaaagta
cccttcaagagcgtcgatgagttggcagaggtatggtgtgaatgggctgagctggagttg
aggaatgaaaactatgacgaggctatccgactgatgcaacgagcaacaacgataccgcgt
gacccgaagaaggtcaatttctatgacgaatccctttcccctcaacaacgtctgttcaag
tccctcaaaatatggtcattttatagtgatttagaggaatcgattggatcggtggaatct
accaaggcggtttacgacaagatcatggagctcaagattgcaaatgctcaggtcattgtc
aactacgccgggtttttagaagagaacaagtacttcgaagagagcttcaaggtgtacgaa
cgaggtatcgagttgttccacccttctgtagccttcgaaatctggaacatctacctgtcc
aaattcgtcaagcgatacggcggtaagaaattggaacgagctagagatctgttcgaacaa
gccctcgagaattgtccacctaaattctgcaaaccgatatacttgctctacgcaaaactc
gaagaagaacacggtttggccaaacgagcaatgggaatatacgatcgagcctgtacaact
gtgcaggattcggacaaattcgatatgttcactatttacatcgcgaaagccaccggcaat
ttcggattaccggctactcgaccaatctacgaacgagcgctggagagtctgcctgataaa
cagactgccgagatgtgtaagcggttcgcgaggatggagaggaagttgggtgagatcgat
cgagcgagagcgatttatgcgcacgcgagtcaattctgtgatccgagagtcgagggcgac
ttctggaacgagtggaaccaattcgaagtggacaccggatcagaagatacgttccgagag
atgctccgaatcaaacgagcggtccaagctgcattcaacaccgagacgtccttcatcgct
gctcaaacagccgctgctgcgaaaggagctgagaaaccaacagatacgtctgctcaagat
gctgcggatccgatggcagctatggaacgtgatctcccggcatccaccgcggcagccaag
aagactggcggacctgctttcgtcgcttctacgctgaagacccagaatgcacatggtata
gatcaagcggaagatggggcggacggtgaggcggtggcgaatcctgatgcgattgagatg
gacgaggacgatttttag
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integrated database retrieval system
