Kwoniella dejecticola: 28971741
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Entry
28971741 CDS
T10965
Symbol
I303_108051
Name
(RefSeq) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
kdj Kwoniella dejecticola
Pathway
kdj03013
Nucleocytoplasmic transport
kdj03015
mRNA surveillance pathway
kdj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kdj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
28971741 (I303_108051)
09122 Translation
03013 Nucleocytoplasmic transport
28971741 (I303_108051)
03015 mRNA surveillance pathway
28971741 (I303_108051)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kdj03019
]
28971741 (I303_108051)
03041 Spliceosome [BR:
kdj03041
]
28971741 (I303_108051)
Enzymes [BR:
kdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
28971741 (I303_108051)
Messenger RNA biogenesis [BR:
kdj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
28971741 (I303_108051)
Spliceosome [BR:
kdj03041
]
Complex C
Other components
EJC/TREX
28971741 (I303_108051)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
28971741 (I303_108051)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
CMS1
DNA_ligase_A_N
Ned1_M
Motif
Other DBs
NCBI-GeneID:
28971741
NCBI-ProteinID:
XP_018259970
UniProt:
A0A1A5ZWD9
LinkDB
All DBs
Position
10:complement(join(1401198..1401319,1401389..1401570,1401659..1401768,1401844..1401975,1402039..1402157,1402660..1402961,1403048..1403156,1403230..1403297,1403373..1403518))
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AA seq
429 aa
AA seq
DB search
MSRPDEEELVDYDEAAEETFAPAATATNGDKADGDKKGSYVGIHSTGFRDFLLKPELLRA
ISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLACLQQIEPVDGEVGIVIL
CHTRELAYQIRNEFARFSKFMTNVRTGVFYGGTPISADQEILASKEKCPHIVVGTPGRTM
ALVRDKKLNASKVKHFVLDECDKMLETLDMRRDVQEIFRATPHHKQVMMFSATLSKDIRT
TCKKFMQSPLEIYVDDETKLTLHGLQQYFLKLEEKEKNRKLNDLLDNLEFNQVCIFVKSV
ARATQLDALLQECNFPSICIHSALPQQERISRFQQFKAFEKRILVATDIFGRGIDVERVN
VVINYDAPTDADSYLHRVGRAGRFGTKGLAISFVSSDGDSEVLQKIQERFTVAIPTLPET
IDPATYMTS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtctagacctgacgaagaagaactcgttgattacgatgaggccgccgaggagaccttc
gccccagctgctacggccacaaacggtgataaagcagacggtgacaagaaaggttcatac
gttggtattcactctaccggtttccgagatttcttgttgaaacctgaattactccgagcc
atctctgatctcggtttcgagcacccttctgaagtgcaacaagaatgtattccccaagcc
atcctcggtactgatgttttatgtcaagctaaatccggtatgggtaagaccgccgtattc
gtcttagcatgtttacaacagatcgaaccagtagatggagaagtaggaattgttattctt
tgtcacacccgagaattggcttatcaaatccgaaatgagtttgctcgattctccaagttc
atgaccaacgtcaggaccggtgtcttctacggtggaacacccatctcggctgatcaagag
atactcgcctccaaggagaaatgccctcacatcgttgtcggtacaccaggtagaaccatg
gccttagtgagagacaaaaagcttaacgcaagcaaggtcaaacatttcgtcctggatgaa
tgtgataagatgttagaaactcttgacatgcgaagagatgttcaggaaatcttcagagcc
actcctcaccacaagcaagtaatgatgttctccgccaccctctccaaggatatccgaacc
acctgcaagaagttcatgcaaagtcctctcgagatctacgtcgacgacgagaccaagtta
actttgcacggtttgcaacaatacttcctgaaactcgaggagaaggagaagaacaggaag
ttgaacgatttgctcgataacctcgaattcaaccaggtttgtatctttgtcaaatcagtc
gctagagccactcaactcgatgctttgctacaagaatgtaacttcccttcgatctgcatt
cactctgctttaccccaacaagagcgtatctctcgattccagcaattcaaggcattcgaa
aagcgtattctcgtagctaccgatatcttcggacgaggtattgacgtagaacgagtcaac
gtagttatcaactacgacgccccgacagacgccgactcgtaccttcacagagtcggtcga
gctggtcgattcggtaccaagggtttggccatctcattcgtctcgagcgatggcgattcc
gaagtcctccaaaagatccaagaacgattcacggtggccatcccgactctgcccgagact
atcgaccctgctacgtacatgacctcttag
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