Kwoniella dejecticola: 28971839
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Entry
28971839 CDS
T10965
Symbol
I303_106602
Name
(RefSeq) uncharacterized protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
kdj Kwoniella dejecticola
Pathway
kdj03008
Ribosome biogenesis in eukaryotes
kdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kdj00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
28971839 (I303_106602)
09123 Folding, sorting and degradation
03018 RNA degradation
28971839 (I303_106602)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kdj03021
]
28971839 (I303_106602)
03019 Messenger RNA biogenesis [BR:
kdj03019
]
28971839 (I303_106602)
03009 Ribosome biogenesis [BR:
kdj03009
]
28971839 (I303_106602)
03016 Transfer RNA biogenesis [BR:
kdj03016
]
28971839 (I303_106602)
Transcription machinery [BR:
kdj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
28971839 (I303_106602)
Messenger RNA biogenesis [BR:
kdj03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
28971839 (I303_106602)
Ribosome biogenesis [BR:
kdj03009
]
Eukaryotic type
Pre-60S particles
RNases
28971839 (I303_106602)
Transfer RNA biogenesis [BR:
kdj03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
28971839 (I303_106602)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
28971839
NCBI-ProteinID:
XP_018259212
UniProt:
A0A1A5ZU99
LinkDB
All DBs
Position
8:join(775636..775834,775923..776072,776160..776696,776779..777168,777232..778321,778406..778730,778805..779459,779534..779778)
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AA seq
1196 aa
AA seq
DB search
MEAPDNCGVQQGVPALFRWLSKKYPKIVNKVVEETPKKVMTDDGIVEIPVDISKDFDGAP
YVDNLYLDMNGIVHPCTHPEGKPAPETEEEMMVEIFNYTERVVNMTRPRKVLMMAIDGVA
PRAKMNQQRSRRFRAAQEAADKAEEKREAIKMFEAMGHTVSEETQNQKHWDTNAITPGTP
FMDLLSISLKYWVSHKLTTDPGWKNLKVILSDSSVPGEGEHKIMDWIRRQRSYPTWDANT
SHVIYGLDADLIMLSLATHEPNFRVLREDVFAQGSKGPQPCKNCGQTGHLTANCIGEKKA
KDPNVVEVAKPVDPKPFIFLDVACLREYLAVELNLPGVPFKFDLELAIDDWIFMIFFVGN
DFLPHLPSLEIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQIILEGLAKSEDEIF
QKRKEDEERQENNNKRRRVDDHRRQNDAKARGNGQHTRFDDAPKGTMQLNGTEYVAVTPS
ATARGGPLHPSLPTRPGFDLVSKEEVNKKNDDELKKAMSSSASNSDIVKNRRAIRMANLS
AAEALKAELMGENVESAEPENVTVENTEDEEKEQLLVGEAEDVLEQQGEDEGVDEEIIQP
AVKSDEDEGEAPIGDETMEGDDNASPERPNKRKRNGSAEGDEESDGGSSSSSSSDEDDDD
DDAPPNPEADQPVPKKKLKVNPDGTVDGYEDDVKLWEPGYRERYYEKKFGVSLTDTEFID
NITKSYMEGLCWVLEYYYQGVPAWDWFYPYHYAPFAQDFKNIDKFKIEFKQGMPFTPYAQ
LLGVFPAASRIHLPEPLQKLMIDEDSPILDFYPSDFEIDMNGKKMAWQGVALLPFIDQDK
LLAALQSRIPLLTDDERRRNTHGDSVMFVSNQQEYGLSQACAELYGLRAKKQGQEEKLVP
LEPQQTEGMTGSILPDSKYIPGTTFETPIPGIDECPDIENNESISVRYFFPRQAHPHRSI
ILSRFKPLPARLSESDRDWVRRGGGGGHHHRHGGPRHSGGGGDNRTGGPGMARGGYHQTP
QSSLPQNRTANGYPKPSPGDLARHGAAPGGYHVPPPPRPVSAYGAPPSNYGYGGYGGAPS
SGGYGGYGGYGGGGASHAPYAAQGGYGGYGNGSAYSAYNPPPPRSNPYAAPPPNAYGAPR
PPYGARPPAPPPQNGYGGYGGAGAGGARGGYNPYGGSNGAYQPRNGGGGGGGGRRY
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgcctgacaattgtggggttcaacagggtgtcccagctctgttcagatggtta
tccaagaaatacccaaagatcgtcaataaggtggtggaggagacgccgaagaaggtgatg
accgacgatgggatcgttgaaatacccgtagatataagtaaagactttgacggtgcgcca
tatgtggataacctgtatctggatatgaacggtatcgtgcatccatgtacgcatccggaa
ggaaaacccgcaccggagactgaggaggagatgatggttgagatcttcaattatacggaa
cgggtcgtcaatatgaccagaccaaggaaggtattgatgatggccattgacggagtcgcc
cctcgagcaaagatgaaccaacagcgttcgcgtcgtttcagagctgctcaagaagcagcc
gataaagcagaggagaaacgagaagcgatcaagatgttcgaagctatgggtcacaccgta
tctgaagaaacgcaaaatcagaaacattgggacacaaacgccatcacaccaggaacaccg
ttcatggacttattatcgatatctctgaaatactgggtgtcccacaagttgacaacggac
cccggatggaagaatcttaaagtgatattgtctgattcgagcgttccgggagaaggtgaa
cataagatcatggactggatacggcgtcaaagatcgtatcctacttgggacgctaataca
tcgcacgtcatctatgggctggatgcggatctgatcatgctgtcactggctactcatgaa
cccaacttcagagtgttgagagaagacgttttcgcgcagggtagtaagggacctcaacct
tgtaagaattgtgggcagactggacatctcacggcgaactgtatcggcgaaaagaaggca
aaagatccaaatgtagtggaagtagctaaaccagttgacccgaaaccatttatcttcctc
gacgtcgcatgcctgagagaatatttggctgtggaattgaatctacctggagtccccttc
aaattcgatcttgaactagcaatagatgattggatcttcatgattttctttgtcggaaac
gatttcttaccgcatctgccaagtttggaaatccgggaaggtgctatagatgttttgttg
aagatctggagagcggaattgcctagaatgggaggatatttgacgaatcatggaaaagtc
aacttggatcgagcgcagataatattagaaggactcgcgaagagcgaagatgagatcttc
cagaagaggaaagaagacgaagagaggcaggaaaacaataataagcggagaagggtcgat
gatcatcgacgacagaacgatgcaaaggcccggggaaatggacaacatactcggtttgac
gatgcgcccaaaggaacaatgcagctcaatgggacggaatatgtcgctgtgacaccatcc
gctacagccagaggaggacctttacatccttctttaccgactcgacctggctttgacctc
gtgtctaaggaagaagtcaacaagaaaaatgatgacgagctcaagaaagccatgtccagt
tccgcttctaattccgacatcgtgaagaacaggagagcgatacggatggccaatctcagt
gcagctgaggcactcaaggcggaattgatgggagaaaatgtggagtcagccgagcctgag
aacgtcactgtcgagaacaccgaagacgaggagaaagagcaattgcttgttggagaggcc
gaggatgtactggagcagcaaggggaagatgaaggtgtggacgaagaaattatacagcct
gccgtcaagtcagacgaggatgaaggcgaagctccaataggagacgagacaatggaaggg
gatgacaacgcatcacccgaaagaccgaataagaggaagcggaatgggtcagctgaaggt
gatgaggagagcgatggaggatcatcttcctcaagtagctcagatgaggacgacgatgat
gacgatgcaccgcccaaccccgaagccgatcaaccggtaccgaagaagaagctcaaggtc
aaccctgatggtactgtagacggatacgaggacgacgtgaagctttgggaacctggatat
cgagaacgatactacgagaagaagtttggcgtctctcttaccgataccgagttcatcgac
aatatcaccaaatcctacatggaaggtctgtgttgggttttggaatactattaccaaggt
gttccagcttgggattggttctacccttatcattatgctccatttgctcaggatttcaag
aacatcgataagttcaagattgaattcaagcagggcatgcccttcacgccgtacgctcag
ttgttgggtgtattccccgctgcaagtcgaatacatttacctgaacctctacagaagttg
atgatagatgaggattctcctatcttggatttctacccatccgactttgagatcgatatg
aacgggaagaagatggcctggcaaggtgtcgcattactgcctttcattgatcaagacaaa
ttgcttgccgcgctgcaaagtcggataccactgttgaccgatgacgaaagacggaggaat
actcatggcgatagcgtgatgttcgtctcgaatcaacaggaatatggattgagtcaagct
tgtgcggagctgtatggtttgcgcgctaaaaagcaaggccaagaagagaagctcgtaccc
ttggagcctcagcagacagaaggaatgaccggatcgatactacccgattcaaaatacatc
ccaggcacaacattcgaaactcctatacctggcattgatgaatgtccggacatcgagaac
aacgagtccatatcagtcagatacttcttcccgcgacaagctcatccgcaccggtcaatc
atcctttcccgattcaagccgttacccgcgaggctgagcgagagcgatcgagattgggtt
aggcgtggtggaggaggtggtcatcatcatcgacatggcggacctaggcattctggtggt
ggcggagataacaggaccggtggacccggtatggcccgaggaggatatcatcaaaccccc
caatcgtccttaccgcaaaacaggaccgctaacgggtatccgaaaccctctccaggcgat
ttagctcgtcatggcgctgcacctggtggatatcatgtgccgcccccaccaagaccagtc
agtgcttatggtgctccgcccagcaattatgggtatggtggatatggcggtgcgccatcg
tcaggagggtatggagggtacggcgggtacggtggaggtggagctagtcatgctccgtat
gctgctcaaggtggttatggcgggtatggaaatggttccgcttatagcgcatataatcct
cccccacctcgatcgaatccgtacgcagctccgccgcctaatgcttacggtgctcctcga
ccgccgtacggcgcgcgtccaccggcacctccacctcagaatggctatggtggatatggt
ggtgcaggagcaggaggagcaagaggaggatataatccgtatggaggttcgaatggggct
tatcagcctagaaacggtggcggtggtggtgggggtggacgtaggtattga
DBGET
integrated database retrieval system
