Candidatus Kirkpatrickella diaphorinae: N5W20_02400
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Entry
N5W20_02400 CDS
T09554
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
kdp
Candidatus Kirkpatrickella diaphorinae
Pathway
kdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N5W20_02400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kdp03019
]
N5W20_02400
Messenger RNA biogenesis [BR:
kdp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N5W20_02400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B_2
Lactamase_B
RNase_J_C
Anti-Pycsar_Apyc1
DUF4843
Xan_ur_permease
Motif
Other DBs
NCBI-ProteinID:
UYH51739
UniProt:
A0ABY6GJN7
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Position
531242..532888
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AA seq
548 aa
AA seq
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MTETIGNFAFLPLGGTGEIGMNLNLYMLDGHYLAVDCGIGFSGNDTPEAEILMPDPSFLA
ERHDQLCGLVVTHAHEDHLGAIEHLWPQFKCPIYATPFAAAVLKRKLGEARMLDKVQINV
IAPGARFEVGPFDLQFISVTHSVPEAQSLAMRTPYGNYIHTGDFKIDEAPLLGPMTDFDS
FRQLGEDGVRAVIGDSTNVFREGPSGTEQSVREGLTTLIADLTGRVAVTCFASNVARVES
IAMAARAAGRKVVTVGRSLRNLEVAARECGYLTDIPPFLTEQDAAHIPDRELLLIVTGSQ
GEPRSALTRIAADTHPNISLGEGDTIIYSSRMIPGNEHAVIAVQDNLSRRGVRVLTDRDH
PVHVSGHATSGDLRRLYEVLKPEYVVPTHGEWRHLTAHADLARKVGAKTVLLEDGDILQL
APGKPEIIDTAPTGRYVLDGSRILPLTSDVLAARRRMLYNGMVIGSFAVDDEGFMIGLPK
ISAPGLLESTDPESHRIVEDFANAIDDIPDNIRAEDDAFRDAAKTALRRALGRKLQKRPL
VDVHLLRV
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaaccatcggcaattttgcctttctgcctctcggcggaacgggcgaaatcggc
atgaacttgaatctttacatgttagacgggcattatctggctgttgattgcgggattggt
ttttccggcaatgacacgccggaagctgaaatcctcatgcccgacccaagcttcctggct
gaacgtcacgaccagctttgcggcctcgtcgtcacgcatgcgcatgaggatcatctgggt
gcgattgagcatctctggccacaattcaaatgcccgatctacgcgacacctttcgccgct
gccgttttgaagcgcaagcttggtgaagcccgcatgctcgacaaagtgcagatcaacgtc
atcgcgcccggcgcgcgttttgaggtgggtccgttcgatctgcaatttatttcggtgacg
cattccgtcccggaggcgcagtcccttgccatgcgcacgccctatggtaactacatccat
acgggcgatttcaaaatcgatgaggcccccctcctgggcccgatgaccgatttcgacagt
ttccgacaattaggggaggatggcgtgcgtgccgtgatcggcgacagcacaaatgtcttc
cgtgaaggcccctcgggcacggaacaatcggtgcgggaagggctgaccaccctcatcgcg
gacctgaccggtcgcgtcgcggtcacatgttttgccagtaatgttgcacgcgtggaatcc
atcgcaatggcggcccgggcagcggggcgaaaagtcgtgacagtggggcgctccctccgc
aaccttgaagtcgccgcgcgggaatgcggctatctgacggatattccgccttttctgacg
gagcaggatgcagcgcatatcccggaccgtgaattgcttctgatcgtcacgggaagtcag
ggtgagccccgctcagccttgacgcggatcgcggcagacacgcacccgaacatctccctc
ggggagggtgacaccattatttacagctcacgtatgatccccggcaacgagcacgctgtc
atcgccgtgcaggataatctctcccgccgcggtgtgcgtgttttgacggatcgtgaccat
cccgtgcatgtttcaggtcacgccaccagtggggacctgcgcagactttatgaagttctg
aagcccgaatatgtcgtccccacccatggcgaatggcgccatctgacagcccatgcggat
ctcgcgcgcaaggtgggcgcaaagaccgtgctgcttgaggatggggacattctgcaactg
gcgcctggcaagccggaaatcatcgatacggcaccgaccgggcgttacgtactggatggc
agccgcatcctgcccctgaccagcgatgtcctcgcggcgcggcggcgcatgctttataat
ggcatggtgattggcagcttcgctgtcgacgatgaaggcttcatgatcggcctgccgaaa
atcagcgcgcccggattgcttgaaagcacggacccggagtcacaccggattgttgaggat
ttcgccaatgccattgacgatatcccggataatatccgcgcggaggatgacgcgttccgc
gatgcggccaaaacggcgctgcgacgcgctctgggacgcaaattgcaaaagcgccccctt
gtggatgtccatctcttacgcgtttga
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