Kroppenstedtia eburnea: GXN75_00680
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Entry
GXN75_00680 CDS
T06618
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
keb
Kroppenstedtia eburnea
Pathway
keb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
keb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GXN75_00680 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
keb03400
]
GXN75_00680 (mfd)
Enzymes [BR:
keb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GXN75_00680 (mfd)
DNA repair and recombination proteins [BR:
keb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GXN75_00680 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
PD40
DUF8746
RecG_dom3_C
DnaJ
Motif
Other DBs
NCBI-ProteinID:
QKI80648
LinkDB
All DBs
Position
119483..123028
Genome browser
AA seq
1181 aa
AA seq
DB search
METLLRLYQKDEEFQSTAVSLKEGLKEQMVAGLTGSARMLYVASLYRKTRRPVLLVTHNL
NQAQKAVEDLYELLPKDQVLLYPANELVATEIALDGHETLGERVQVLSRLSKGFSGVFVV
PFAGLRKLVPPAHVFSANHRTLKVGEVHPVESLIDQLVKVGFERVEMVEKPGEFSVRGGI
LDIFPVTYSHPVRVEWFDDEVDSIRPFSVADQRSQTKWDQVEIPPARELFADPDSLYRAG
DEVAGLLQERLSKVKDPELRQKLTEKITWEIEQLKSGTLFTGIYKYISRIYPGNHTLLDY
LAKETVWVLDEPARIQESARQMEKEEGEWQTALLQEGEFLPQLKVSHSYEELFSRREHPR
IYLSLFMRQVSGIQPQNIVQFICRGMQQFHGQMHVLKTEWDRWVKSKYRVLFLASTEERA
ARLERVLADYGMEVSRTRDESPLVPGRPTIRVASLAGGFEMGGARLAVVTEGEVFTQKRR
RIRRTAKLDHAEKIKDYQELQPGDYVVHVNHGIGRYAGTETLEVGGIHKDYLLIQYAGND
KLYVPIEQIDQVQKYLGSEEKTPKVYSLGGSEWSKVKNKVRSSVQDIASDLIKLYAKRQS
ERGHAFSPDTPYQREFDALFPYEETADQLRSIEEIKQDMEKTQPMDRLLCGDVGYGKTEV
AIRAAFKATMDGKQVAVLVPTTILAQQHFETFRERFSDFPVEIRVLSRFRSRKEQRETIQ
GVNDGTVDIVIGTHRILSKDVQFKDLGLLIVDEEQRFGVKHKEKIKKIKSNIDVLTLTAT
PIPRTLHMSMMGVRDLSVIETPPENRFPVQTYVLEYSAALVREAIEREMARGGQVYFLYN
QVQNIDKMVEQIRMLVPDARIAVAHGQMAETELEKVMLDFLDGETDVLVSTTIIETGVDI
PNVNTLIIYNADRMGLSQLYQLRGRVGRSNRIAYAYFTYQRNKVLSETAEKRLQAIKEFT
ELGSGFKIAMRDLAIRGAGNLLGAEQHGHIATVGFEMYTQMLKEAIQDQQGEKEEETRPD
PVIELNVDAYIPSDYIRDEKQKIEIYKKIRAIRTLDAARDLEEEIEDRFGDLPRPVQNLL
RVARLHAYAIRYDMEEIKQNGYDIVIRLHPDQNQVVDGQRLFRVIQNFHGRIRLSSGERI
GITFRLKGIPMAEGLEMVEQFLIQYETVPKTKGAVRNAANE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ttggagacattgctccggttatatcagaaggatgaagaatttcaatccactgccgtttcc
ttgaaagaagggctgaaagaacaaatggtggccggtttgacaggttcggcgcgcatgctc
tatgtggcctccctgtaccgcaaaacccgtcggccggttttgctggtcacccataatctg
aaccaggcccaaaaagcagtggaagacttgtatgaactattgccaaaagatcaagtgttg
ctctatccggccaatgaattggtggcgacggagatcgctttggacggtcatgagaccctg
ggggaacgggttcaggtcctttcccgtttatccaaaggattttccggggtttttgtggtg
ccctttgccgggctgagaaaattggttccgcctgcccatgtcttttccgccaatcatcgg
acgctgaaggtgggtgaggtgcatcctgtcgaatcattgattgaccaactggtcaaggtg
ggtttcgagcgggtggagatggtggagaaaccgggggaattcagcgtgaggggcggaatt
ctcgatattttccccgtcacttattcccacccggtccgggtggaatggttcgatgatgaa
gtggattccatccgtcctttctccgttgctgatcagcgctcccagaccaaatgggatcag
gtggaaattcctccggcaagggaactgtttgccgatcccgactctttgtaccgggccggg
gatgaggtggcgggcctcctgcaagagcgattgtccaaggtgaaggatcctgaattgagg
caaaaactgaccgagaaaatcacctgggagattgagcagttaaaatccggcactctcttt
acgggcatctacaaatatatcagccggatctaccccgggaatcacacgctgttggactat
ctcgccaaagagaccgtctgggtgttggatgagcctgcacggatccaggagtcagcccgt
cagatggagaaggaagaaggagagtggcagaccgccttgcttcaggagggggaatttctc
ccccagctgaaagtttcccacagctatgaggagctgttttcccggcgggaacatccgcga
atctatctttccctgttcatgaggcaggtcagcggcatccaaccccagaacatcgtccaa
ttcatctgtcggggtatgcaacagtttcacggtcagatgcacgtgctcaaaacagagtgg
gatcggtgggtgaaatccaaatacagggtcctgtttttggccagtactgaagagcgggcg
gcccggttggaacgggttctggccgactatgggatggaggtgtcccggacccgggatgag
agtcccctggtgccgggccgtcccacgatccgggtggcctccctcgccggcggatttgag
atgggtggcgcacggctggccgtggtgacggaaggggaggttttcacgcaaaagcggcgg
cggatccgccgcaccgccaaactggatcatgcagagaagatcaaggattaccaggagctg
cagcccggggattatgtggttcatgtcaatcatggaatcggtcgctatgccggaacggaa
accctggaagtcgggggaattcacaaggattatctcttgatccagtatgccgggaatgac
aaactgtatgtacccatcgaacagattgaccaagttcagaaatatttgggcagtgaggaa
aagacgccaaaggtgtacagtctgggagggagtgaatggagcaaggtcaagaacaaagtt
cgctcctccgtgcaagatatcgcttccgacctgatcaagctgtatgcgaagcggcagtcg
gaacggggccatgccttttctcccgacactccttatcaacgggagtttgatgccctgttt
ccttatgaggagacggcagaccagcttcgctccatcgaggagatcaagcaggatatggag
aagacccagccgatggatcgtctcctctgcggagatgtcggttacggaaaaacagaagtg
gcgatccgggcggcttttaaggcgacgatggatggcaaacaggtggccgtgctggttccc
acgaccattctggcccaacaacacttcgaaacatttcgggagcgcttttccgactttccg
gtggagatccgggtgttgtcccgtttccgttcccggaaagagcaacgggaaacgatccaa
ggggtgaatgacgggaccgtcgatattgtgatcggaacccaccgcatcttgtccaaagat
gtccaattcaaggatctgggcctgttgatcgtggatgaggagcaacgtttcggggtgaaa
cacaaagagaaaatcaaaaaaataaagagcaatattgacgtcctcaccctgacggccaca
ccgattccccgtaccctgcacatgtcgatgatgggggtgcgggatctgtcggtcattgaa
acaccgccggaaaaccggtttccggtccagacctatgtattggagtattccgccgccttg
gtgcgggaagcgatcgaacgggaaatggcccggggcggacaggtttactttttgtacaac
caggtgcagaacatcgacaagatggtggagcagatccggatgctggtacccgatgcccgg
attgcagtggcccatggacagatggcggagacggaactggagaaggtgatgctggacttt
ttggatggggagaccgatgtgctggtgagcaccaccattattgaaaccggggtggatatt
cccaacgtcaacacgttgatcatatacaacgcggacagaatggggctttcccaactgtat
caattgcggggacgggtgggtcgctccaaccggatcgcctatgcatactttacctaccag
cgaaacaaggtattgtcggagacggcggaaaaacggctgcaagcgatcaaggaattcacc
gaactgggttccgggtttaaaatcgccatgcgggacctggccatccggggggccggcaat
ctcctcggagcggaacagcatggacatatcgccactgtcgggtttgagatgtacacccag
atgttaaaggaagcgatccaggatcaacaaggggaaaaggaagaagagacccggcccgac
cccgtgatcgaactgaatgtggatgcctatatcccctcagactatatccgggacgaaaag
cagaagatcgagatttacaaaaagatcagggcgatccgcaccctggatgcggcccgggac
ctggaagaagaaatcgaggaccggtttggggatctgccgcgtccggtgcaaaatctgctc
cgggtggcccgcctccatgcctatgcgatccgatatgacatggaggagatcaaacaaaac
gggtatgatatcgtgatccggctccatccagaccagaaccaggtggtggacgggcagcgt
ctgttccgggtgatccagaatttccacggacggatccgcctctcttccggggaacggatc
ggcatcaccttccgcctcaaagggattccgatggcggaaggactggaaatggtggaacaa
tttctgatacaatatgaaacggttcccaaaacgaaaggagcagttcgaaatgcagccaat
gaataa
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integrated database retrieval system
