Kribbella flavida: Kfla_2321
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Entry
Kfla_2321 CDS
T01155
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
kfl
Kribbella flavida
Pathway
kfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kfla_2321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kfl03019
]
Kfla_2321
03009 Ribosome biogenesis [BR:
kfl03009
]
Kfla_2321
Enzymes [BR:
kfl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Kfla_2321
Messenger RNA biogenesis [BR:
kfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Kfla_2321
Ribosome biogenesis [BR:
kfl03009
]
Prokaryotic type
rRNA processing factors
Kfla_2321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ADB31397
UniProt:
D2PUT1
LinkDB
All DBs
Position
2425336..2428695
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AA seq
1119 aa
AA seq
DB search
MLDNEPNTTEAADVAATDQPARKAGARKTAAKKTAVKSSTPRKRTVKKAAASAAEPAEAA
VVSTQSDAEAADPAPAPVKKTAARKTAAKAPAKKAAAKTAAKRTVKKTARKATGQDPLPE
DTAAEATPETPADGGPVVEAAPEPAKKTTRRRTTKKSAAPQPDLLTPDSPLTDGPVADAE
EDEDAQSEDTAAETDDTSSAGDDQASVTTSAPKSITTTGTSYVSLGGPSSSTPTAEETPE
ETPEAPTRRSRRRAPVAAPIFQAPVEVAPQAASTSPVEATPEAEAPRKRTRSRRGAAADA
APVADAQAADELTDGPGTAADTDEQPSTSRRRRSRRGRDAEEVAADRAEPVLEAARELSA
DDATVADVDVEAEADDSDGDEGGEGTRRRRRRRGGRRRRKSGEGAEDSADENDEDENDDE
PADEAEADAEDTDQSEDDAEGSGSSSRRRRRRRRRKGEDAASAPDDPDEIVVRVREPRSK
NTANEITAVEGSTRLEAKKQRRREGRAAGRRRAPIVTEAEFLARRESVERAMVIRARGDL
TQIAVSEDNVLVEHYVAQEEQVSLIGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEV
DWNTLGGGNGPRKIESVLKSGQAVLVQVTKDPIGHKGARLTNQISLPGRYVVYVPRGGNG
GISRKLPDTERSRLKGILKDIVPDEAGVIVRTAAEGATEEELTADVSRLQAYWEDIDKKS
KSGQAPQLLHGEPDLLIRVVRDLFTEDFAKLVISGDDAFDQVSEYVSAVAPHLAERVAKW
TGDGDVFANFRIDEQIKKALDRKVWLPSGGSLIIDRTEAMTVVDVNTGKFTGSGGNLEET
VTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAE
VTSLGLVQMTRKRIGTGLLEAFGENCDHCGGRGLILHDEPKESRRRQDGRGGAEQKNGHD
HKNGTGDGEGKKGSRRNRGKGRRDDEHTETPEPVQHNSDAAQRLAQIAAATVNGNAGNGH
GTSEPATEPATEAPAAEDRGNGPADRTDGSAGSGAEAGADAGTGEATAEPTDAAEPNGSS
RSSRRRRSSRSRSKSAGDEGGSAPDSGGEAPVELVSSGR
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacaacgagccgaacacgactgaggcggccgacgtggccgccaccgaccagccg
gcccgcaaggccggcgcgcgaaagaccgccgccaagaagacggccgtcaagagcagcacg
ccgcgcaagcgcacggtcaagaaggccgccgcgtccgccgcggagccggccgaggccgcc
gtggtgagcacccagtccgacgccgaggccgccgatccggcgcccgccccggtgaagaag
accgccgcccgcaagaccgcggccaaggcgccggccaagaaggcggccgccaagaccgcg
gccaagcgcacggtgaagaagaccgcccggaaggcgaccggccaggaccccctgcccgag
gacaccgccgccgaggccacccccgagacccccgccgacggcggcccggtcgtcgaggcc
gcgccggaaccggccaagaagaccacccgccgccgcaccaccaagaagtccgcggccccc
cagcccgacctgctcacccccgactcccctctgaccgacggcccggtggcggacgccgaa
gaggatgaggacgctcagtccgaggacaccgccgccgagaccgacgacacgtcctcagcc
ggcgacgaccaggcctccgtcaccacgagtgctccgaagtcgatcaccaccaccggcacc
tcgtacgtctccctcggcggcccgtcctccagcacccccaccgctgaagagacccccgaa
gagacccccgaggccccgacccgccgctcccgccgccgcgccccggtcgccgccccgatc
ttccaggccccggtcgaggtggccccccaggccgcctccaccagcccggtcgaggccacg
ccggaggccgaggccccgcgcaagcgcacccgcagccgccgcggtgccgccgccgacgcc
gccccggtggccgacgcgcaggctgccgacgagctgaccgacggaccgggcaccgcggcg
gacaccgacgagcagccgagcaccagccggcgccgccggagccgtcgtggccgcgacgcc
gaggaggtcgccgccgaccgcgccgagccggtgctggaagcagcccgtgagctgtccgcc
gacgacgccaccgtggccgacgtcgacgtcgaggccgaggccgacgactccgacggtgac
gagggtggcgagggcacccgccgccgtcgccgtcgccgcggtggccgtcgtcgccgcaag
tccggcgagggcgccgaggacagcgccgacgagaacgacgaggacgagaacgacgacgag
ccggccgacgaggccgaggccgacgccgaggacaccgaccagtccgaggacgacgccgag
ggctcgggcagctcgtcgcgccgccggcgtcgccgtcgccgccgcaagggcgaggacgcc
gcctccgcgccggacgacccggacgagatcgtggtccgggtccgcgagccgcgcagcaag
aacaccgcgaacgagatcaccgcggtcgagggctcgacccggctggaggcgaagaagcag
cgccgccgcgagggccgcgccgccggccgccgccgcgcgccgatcgtcaccgaggccgag
ttcctggcccggcgcgagtcggtcgagcgggcgatggtgatccgcgcccgcggcgacctg
acccagatcgcggtgtccgaggacaacgtcctggtcgagcactacgtcgcccaggaggag
caggtctcgctgatcggcaacgtgtacctcggccgggtgcagaacgtgctgcccagcatg
gaggccgcgttcatcgacatcggcaagggccgcaacgccgtgctgtacgccggtgaggtc
gactggaacaccctcggcggcggcaacggcccgcgcaagatcgagtcggtgctgaagtcg
ggccaggcggtcctggtccaggtgaccaaggacccgatcggccacaagggcgcccgcctg
accaaccagatcagcctgcccggccggtacgtcgtgtacgtgccgcgcggcggcaacggc
ggcatcagccgcaagctgcccgacaccgagcggagccggctgaagggcattctcaaggac
atcgttcccgacgaggccggcgtgatcgtgcgcaccgcggccgagggcgcgaccgaggag
gagctgaccgccgacgtcagccgcctgcaggcgtactgggaggacatcgacaagaagtcg
aagtccggccaggcgccgcagctgctgcacggtgagccggacctgctgatccgggtcgtg
cgcgacctgttcaccgaggacttcgccaagctggtcatctccggcgacgacgccttcgac
caggtcagcgagtacgtctcggcggtcgcgccgcacctggccgagcgggtcgcgaagtgg
accggcgacggcgacgtgttcgcgaacttccggatcgacgagcagatcaagaaggcgctg
gaccgcaaggtctggctgccctcgggcggttcgctgatcatcgaccggaccgaggcgatg
acggtcgttgacgtgaacaccggcaagttcaccggttccggcggcaacctcgaggagacc
gtcaccaagaacaacctggaggcggccgaggagatcgtccgccagctgcggctgcgcgac
atcggcggcatcatcgtgatcgacttcatcgacatggtgctggagtcgaaccgcgacctg
gtcctgcgccggctggtcgagtgcctgggccgggaccggaccaagcaccaggtcgccgag
gtgacttcgctgggcctggtccagatgacccgcaagcggatcggcaccgggctgctcgag
gcgttcggcgagaactgcgaccactgcggtggccgcggcctgatcctgcacgacgagccg
aaggagtcccgccgccggcaggacggccgcggtggcgcggagcagaagaacggccacgac
cacaagaacggtaccggggacggcgagggcaagaagggctcccgccgcaaccgtggcaag
ggccgccgcgacgacgagcacaccgagacgccggagccggtccagcacaacagcgacgcc
gctcagcgcctggcgcagatcgccgccgcgacggtcaacggcaacgccggcaacgggcac
ggtacgtccgagcccgccaccgagcccgccaccgaggctccggccgccgaggaccgcggc
aacggcccggccgaccggaccgatggttcggccggatccggcgcggaggccggcgctgac
gccgggaccggcgaggcgacggccgagccgaccgacgccgccgagccgaacgggtcctcc
cgcagcagccgccgccggcggagcagccggagccggtcgaagtccgccggcgacgagggc
ggttcggcgccggacagcggtggcgaggcgccggtggagctggtgtccagtggccgctga
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