Kribbella flavida: Kfla_2980
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Entry
Kfla_2980 CDS
T01155
Name
(GenBank) beta-lactamase domain protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
kfl
Kribbella flavida
Pathway
kfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Kfla_2980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kfl03019
]
Kfla_2980
Messenger RNA biogenesis [BR:
kfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Kfla_2980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ADB32045
UniProt:
D2Q1Q6
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All DBs
Position
3168057..3169751
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AA seq
564 aa
AA seq
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MSHPHPDLAAPAPLAPGALRVIPLGGLGEVGRNMTVFEYDGKLLVVDCGVLFPDENQPGV
DLILPDFQPIRERLHDIVAVVLTHGHEDHIGGLPYLLRERGDIPVLGSRLTLALLEGKLR
EHRHRNVPQQVVVEGEKVRLGPFECEFVAVNHSIPDALAVAIRTPAGLVLHTGDFKMDQL
PLDDRITDLRAFARLGEEGVDLFCVDSTNSEVPGFTTHERDIAPVLDRVFTNARNQRIIV
ACFASHVHRVQQVMDAAVKHRRKVAYVGRSMVRNMAVARDLGFLTVPGETLIDMRELENY
PPEQVVLVSTGSQGEPMSALSRIAANDHNSVQLQPGDTVVLASSLIPGNENSVYRVINGL
TRHGANVIHKGNALVHVSGHASAGELLYCYNIVKPRNVMPVHGEIRHLHANAALARQTGV
PAENVVVVEDGVVVDLVDRLAVVAGKVDCGYVFVDGSTVGDITETSLKDRRILGDEGFIS
VIAVMDSVTGKLTAGPEIQARGFAEDDTVFDDLRPKIEAEIEKAIGSGVDDMYQLQQVIR
RVVGKWVSDTHRRRPMIIPVVVES
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatccccaccccgatctcgccgccccggcaccactggcgccgggtgcgctccgg
gtgatcccgctcggtgggctcggcgaggtcggtcgcaacatgaccgtcttcgagtacgac
ggcaagttgctggtcgtcgactgcggcgtgctgttcccggacgagaaccagcccggtgtc
gatctgatcctgcccgacttccagccgatccgggagcggttgcacgacatcgtggcggtg
gtgctgacccacggccacgaggaccacatcggcggcctgccctacctgctgcgcgagcgc
ggcgacatcccggtgctcgggtcccggctcacgctggccctgctcgagggcaagctccgc
gagcaccggcaccgcaacgtgccgcagcaggtcgtcgtcgagggggagaaggttcggctc
ggcccgttcgagtgcgagttcgtcgcggtcaaccactcgatcccggacgcgctcgcggtc
gcgatccggaccccggccggcctggtgctgcacaccggcgacttcaagatggaccagctg
ccgctggacgaccggatcaccgacctgcgcgcgttcgcccggctcggcgaggagggggtc
gacctgttctgcgtcgactccaccaactccgaggtgcccggcttcaccacccatgagcgc
gacatcgcgccggtgctggaccgggtcttcaccaacgcccgcaaccagcgcatcatcgtc
gcctgcttcgccagccacgtgcaccgggtccagcaggtgatggacgccgcggtgaagcac
cgccgcaaggtcgcgtacgtcggccgctcgatggtccgcaacatggccgtcgcccgggac
ctgggcttcttgaccgtgcccggcgagacgctgatcgacatgcgcgagctggagaactac
ccgccggagcaggtggtgctggtctccaccggttcgcagggcgagccgatgtcggcgctg
tcgcggatcgcggccaacgaccacaacagcgtgcagctgcagcccggcgacaccgtcgtg
ctcgcgtcctcgctgatccccggcaacgagaactcggtctaccgggtgatcaacggcctg
acccggcacggcgcaaacgtcatccacaagggcaacgcgctggtgcacgtgtccggccac
gcgtcggccggtgagctgctgtactgctacaacatcgtcaagccgcgcaacgtgatgccg
gtgcacggcgagatccggcacctgcacgcgaacgcggcgctggcccgccagaccggcgta
ccggccgagaacgtggtggtggtggaggacggtgtggtggtcgacctggtcgaccgcttg
gccgtggtggccggcaaggtggactgcggctacgtgttcgtggacggctcgacggtcggc
gacatcaccgagacctcgctgaaggaccggcggattctcggggacgagggtttcatctcg
gtgatcgccgtgatggactcggtcaccggcaaactgaccgccggacccgagatccaggcc
cgcgggttcgccgaggacgacaccgtcttcgacgacctgaggccgaagatcgaggcggag
atcgagaaggcgatcggcagcggtgtggacgacatgtaccagctgcagcaggtgattcgc
cgggtggtcggcaagtgggtgagcgatactcaccgcagacgcccgatgatcatcccggtc
gtcgtggagagctga
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