Kribbella flavida: Kfla_3654
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Entry
Kfla_3654 CDS
T01155
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
kfl
Kribbella flavida
Brite
KEGG Orthology (KO) [BR:
kfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kfl03019
]
Kfla_3654
Enzymes [BR:
kfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Kfla_3654
Messenger RNA biogenesis [BR:
kfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Kfla_3654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
NACHT
AAA_16
SLFN-g3_helicase
ABC_tran
AAA_30
TsaE
AAA_23
ResIII
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
ADB32709
UniProt:
D2PN07
LinkDB
All DBs
Position
3929973..3933905
Genome browser
AA seq
1310 aa
AA seq
DB search
MTVAELLPRLEQLTVHDREQLGRRLERVRTAREPGKRSQALQGMLAAIEQAEHRVELRRL
AVPEISYPEELPVSQLKDDIAAAIRDHQVVVIAGETGSGKTTQIPKICLELGRGVQGLIG
HTQPRRLAARTVAERIAEELGTELGDTIGYAVRFTDKVSERSLVKLMTDGILLNELQRDR
DLSRYDTLIIDEAHERSLNIDFILGYLKQLLPRRPDLKVVITSATIDPERFAEHFSDAEG
KPAPIVEVSGRTYPVEVRYRPVNDPDDPATLDRDQTQAILDAVDELMVEAPGDILVFLSG
EREIRDTADALNDKFAQQRGRPGAVEVLPLYARLSNAEQHRVFQPHGNRRIVLATNVAET
SLTVPGIKYVIDPGTARISRYSHRTKVQHLPIEPVSQASANQRKGRCGRTSDGICIRLYS
EEHFDSRPEFTDPEILRTNLASVILQMTSIGLGDIAAFPFIDEPDRRSITDGVQLLTELG
AIDSTRRTDRNRRLTDVGRQLAQIPLDPRLARMVVEADKHGCVREVMVIAAALSIQDPRE
RPTDAEAQATQQHARFRDPTSDFLGFLNLWNYLKKQQKELSGNQFRRMCRAEYLNYLRVR
EWQDIFAQLRQVAGQIGVTLNSGEPADPQSVHVSLLAGLLSHLGMKDPANQHQYLGARGT
KFAIFPGSGLFKKPPQFVMAAELVETSRLWARVNAKIEPEWAEDLAGHLIKRSYSEPHWE
RKAGAVMAYEKVTLYGVPIVARRKINYGSVDPEVSRELFIRNALVEGDWDTHHKFWHENR
RLIAEVEELEERTRRRDLLVDDETLFAFYDERIGAEVVTGRHFDTWWKKARQRDPDLLDF
ERSLVVREGAEVKEEEFPLRWTQNGMTFDLTYAFEPGTDADGVTVHIPLLVLNQVTADGF
EWSVPGFREELVTTLIKSLPKAIRRNIVPAPDHARQVLPHLDPSSGPLTDALARELRNLR
DVVIEPSDWDWSRVPEHLRMTFRVVDDHGKAVAEGKDLARLKERLKPRTTAAISKVAATA
VSGLERAGLTDWTFGDLPRSFSEHRNGLTVAGYPALVDEGKTVAIRLQETERDQAAAMWN
GTRKLLLLTMPSVIDVVQRHLTNQQKMTLMAGPHRNVGDLLDDAVSAAIDQLMAAAGGPA
WNLTAFSILRDAVRSELADTVLAILRQVEQVLAHARTVDKQISRSSSPALLAALSDVRGQ
LESLVHRGFITETGAQRLPDLIRYLRGIEQRLDKIAANAMRDRSGMAIVQTLTDEYQARL
RAVPAGKYPSPELLEVRWMLEELRISLFAQTIGTPYPVSEKRIRKALATA
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgtggccgagttgctgccgcggctggagcagttgacggtccacgaccgagagcag
ctgggccgccggctggagcgagtgcggacggcgcgcgagcccgggaagcgctctcaggct
ctccagggcatgctcgccgcgatcgagcaggccgagcaccgggtcgagttgcgccggctc
gccgtaccggagatcagctatcccgaggagctgccggtcagccagctcaaggacgacatc
gccgccgcgatccgtgaccaccaggtcgtcgtgatcgccggcgagaccggctccggcaag
accacccagatcccgaagatctgcctcgagctcggccgcggggtgcagggcctgatcggg
cacacccagccccgccggctcgcggcgcggaccgtcgcggagcggatcgcggaagagctc
ggtaccgagctgggcgacacgatcggctacgcggtgcgcttcaccgacaaggtcagtgag
cgctctctggtgaagctgatgaccgacggcatcctgctcaacgagctgcagcgcgaccgc
gacctcagccggtacgacaccctgatcatcgacgaggcgcacgagcgcagcctgaacatc
gacttcatcctgggctacctcaagcagctgctcccccgccggcccgacctcaaggtggtc
atcacctcggcgacgatcgaccccgagcgcttcgccgagcacttcagcgatgccgagggc
aagccggcgccgatcgtcgaggtgtccgggcgcacctacccggtcgaggtccggtaccgc
ccggtcaacgaccccgacgacccggccaccctcgaccgcgaccagacccaggcgatcctg
gacgccgtcgacgagctgatggtcgaggcgcccggcgacatcctggtgttcctcagcggt
gagcgggagatccgcgacaccgccgacgcgctgaacgacaagttcgcccagcagcgcggc
cggcccggcgcggtggaggtgctgccgctgtacgcccggctgtccaacgccgagcagcac
cgggtcttccagccgcacggcaaccgccggatcgtgctggccacgaacgtcgccgagacc
tcgctgacggttcccggcatcaagtacgtgatcgatcccggcaccgcccggatctcccgc
tacagccatcgcaccaaggtccagcacctgccgatcgagccggtctcccaggccagcgcc
aaccagcgcaagggccgctgcggccggaccagcgacggcatctgcatccggctgtactcc
gaggagcacttcgacagccggccggagttcaccgatccggagatcctgcgcaccaacctg
gcctcggtgatcctgcagatgacctcgatcgggctcggcgacatcgccgcgttcccgttc
atcgacgagccggaccggcgcagcatcaccgacggcgtgcagctgctgaccgagctcggc
gcgatcgacagcacccgcaggaccgaccgcaaccgacggctcaccgacgtcggccggcag
ctggcgcagatcccgctcgacccgcggctggcccggatggtggtcgaggcggacaagcac
ggctgcgtgcgcgaggtgatggtgatcgccgccgcgctgtccatccaggacccgcgcgag
cggccgaccgacgccgaggcgcaggccacccagcagcacgcccgcttccgcgacccgacg
tcggacttcctcggtttcctcaacctctggaactacctcaagaagcagcagaaggagctg
tccggcaaccagttccgccggatgtgccgcgcggagtacctgaactacctgcgggtgcgc
gagtggcaggacatcttcgcccagctgcgccaggtcgccgggcagatcggcgtcacgctg
aactccggcgagccggccgacccgcagagcgtgcacgtctcgctgctggccggcctgctg
tcccacctcggcatgaaggacccggccaaccagcaccagtacctcggggcccgcggcacc
aagttcgcgatctttcccggctcggggctgttcaagaagccgccgcagttcgtgatggcc
gccgagttggtcgagacgtcgcggctgtgggcccgggtgaacgccaagatcgagcccgag
tgggccgaggacctggccggtcacctgatcaagcgcagctactcggagccgcactgggaa
cgcaaggccggcgcggtgatggcctacgagaaggtcaccctgtacggcgtaccgatcgtg
gcccggcgcaagatcaactacggctcggtcgatcccgaggtgtcgcgcgagctgttcatc
cgcaacgcgctggtcgagggtgactgggacacccaccacaagttctggcacgagaaccgc
cggctgatcgcggaggtcgaggagctggaggaacgcacccggcggcgtgacctgctggtc
gacgacgagacgctgttcgcgttctacgacgagcggatcggcgccgaggtggtcaccggc
cggcacttcgacacctggtggaaaaaggcgcggcagcgcgaccccgacctgctcgacttc
gagcggtcgctggtggtccgcgagggcgcggaggtcaaggaggaggagttcccgctgcgg
tggacgcagaacgggatgaccttcgacctcacctacgcgttcgagcccggcaccgacgcg
gacggtgtcaccgtgcacatcccgctgctggtgctgaaccaggtgaccgccgacggcttc
gagtggagcgttcctggcttccgcgaggaactggtcaccacgctgatcaagtcgttgccg
aaggccatccggcgcaacatcgtgccggccccggaccacgcccgccaggtgctgccgcac
ctggatccgtcgtccggcccgctcaccgacgcgctcgcccgcgagctgcgtaacctgcgc
gacgtggtgatcgaaccgtcggactgggactggagccgggtgcccgagcacctgcggatg
accttccgggtggtcgacgaccacggcaaggcggtggccgagggcaaggatcttgcgcgg
ctcaaggaacggctgaagccgaggacgacggcggcgatctcgaaggtcgcggccacggcg
gtcagcgggctggaacgcgccgggctgaccgactggaccttcggcgacctgccgcgcagc
ttctccgagcaccgcaacggtctcaccgtggccggctacccggcgctggtcgacgagggc
aagacggtggccatccggttgcaggagaccgaacgcgaccaggccgcggcgatgtggaac
ggtacccgcaagctgctgctgctcaccatgccctcggtcatcgacgtggtccagcgccac
ctgacgaaccagcagaagatgacgctgatggccggcccgcaccgcaacgtcggcgacctg
ctcgacgacgccgtctccgcggcgatcgatcagctgatggcggcggccggcggcccggca
tggaacctgaccgcgttctcgatcctgcgcgacgcggtccggtccgagctcgccgacacg
gtgctggcgatcctgcggcaggtcgagcaggtgctcgcgcacgcgcgcacggtcgacaag
cagatctcgcggtcgtccagcccggcgttgctggccgcgctctccgacgtgcgtggccag
ctggagtcgctggtgcaccgcggcttcatcaccgagaccggcgcccagcggctgcctgac
ctgatccgctacctgcgcgggatcgagcagcggctggacaagatcgccgcgaacgcgatg
cgcgaccggtccgggatggcgatcgtgcagaccctcaccgacgagtaccaggcccggctg
cgcgccgtaccggccggcaagtacccgagcccggagctgctcgaggtgcgctggatgctc
gaggagctgcggatcagcctgttcgcccagaccatcggtacgccgtacccggtctcggag
aagcggatccgcaaggcgctcgctacggcgtga
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